Thamnophis sirtalis (common garter snake): 106555294
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Entry
106555294 CDS
T06107
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106555294 (CASC3)
03015 mRNA surveillance pathway
106555294 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106555294 (CASC3)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106555294 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
106555294
NCBI-ProteinID:
XP_013929594
UniProt:
A0A6I9YZX6
LinkDB
All DBs
Position
Unknown
AA seq
753 aa
AA seq
DB search
MADRRRQRASQDSSEDDESDSPPGSAGCSPRSSSHRFGLAAAASTAGATAGTENVEPPVT
VGGSPADSECESEDGIEGHAVLSDYESAEDSEAEEGEYSEEETNKMDLKRDRNDTELRTK
ADKGDEKPESKGTVAGERQSGDGQESTEQVENKIGKKLPKHLDDDEDRKNPAYIPRKGLF
FEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSSH
NPDDIKPRRVRKPRFGSPPQRESNWSSERPSKPPRHQSLDNTSVAPRTFINRNSAGTGRM
ASPRAFPKPSGYKDTRPSYRAVDVSSQHAPRFNEQSKPESSYRARRSDPIPAREPSPKSE
IPPIQNSPVKKEEVVLENQTPPADILQTQPDRPVEKKSYSRARRSRNKAGETGKLADEVP
LPSGLMPEPLKTADIIPSPPSAKTGNWEVPVEANLDGLEQDMTQLNMTEQNWNQGQPQFI
PPQGLPNQMHIGAAPPPQFNRIEDMGVQAGRAKRYSSQRQRPVPEPAPPVHISIMEGHYY
DALQFQGPIYTHGENPTPLPPQGVIVQPEMHLSHPGLHPHQTPAPLANAGLYPPPVSMPP
GQQPPPPPPPQQLLAPTYFPPPGVMNFGNPSYPYPPGPLPPPPPPHLYPNTQAQSQVYGG
VTYYNTVQQQVQPKPSPPRRASQPVTIKPPPETDLQFLLGKSVGVGKISLQERVTSLQTS
AVGKGLHTIGSKAILMKEFCSFPPSHFYLGWQK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcgtaggagacagcgcgcttcgcaggatagcagcgaagacgatgaatccgat
tccccgcctggaagcgcaggttgttccccgcgcagcagcagtcaccgctttggcttagcc
gcggcggcaagcaccgccggtgccactgctggaactgaaaatgtggagccgccagtgacg
gttggaggtagcccggccgactcggagtgtgaaagtgaagatggcatagaaggacatgct
gttctctctgattatgaaagtgctgaggattctgaggctgaggaaggagaatacagcgaa
gaagaaacaaataaaatggacttaaagcgggacagaaatgacactgaattgagaacaaaa
gcagacaaaggggatgagaaaccagaatcaaaaggcacagttgcaggtgaaaggcagagt
ggggatgggcaggaaagcactgaacaagttgaaaacaaaattggtaaaaaacttcctaag
catctagatgatgatgaagaccggaagaacccagcgtacatacctcgtaaaggtcttttc
tttgagcatgacctccgtggacaaacccaggaagaggaagtacgacctaagggtcggcag
cgtaaattgtggaaagatgagggacggtgggaacatgacaaatttcgagaggatgagcaa
gcaccaaaatccagacaagagctaattgctctttatggctatgatatccgctcttcacac
aaccctgatgacatcaaacccaggagggtgcgcaaaccaagatttgggagtccaccacaa
agagaatccaattggtccagtgaacgaccaagtaagccaccacgacatcagagtctagac
aatacttctgtggcacctcggacattcattaatcgaaactcagcgggaacaggacggatg
gccagtccaagggcatttcccaaacctagtggctataaagatactcgcccaagttatcga
gctgtggatgtaagtagtcaacatgcacctcgcttcaatgaacaatcaaagcctgagagc
agttaccgagccagacgatcagatccaatccctgcaagagagccttctcccaaatctgag
ataccacctattcaaaacagccctgttaaaaaagaagaagttgttttggaaaatcaaact
ccacctgcagatattttacagacacagccagataggcctgtggaaaaaaaatcctattct
cgggcaagaaggagtcggaacaaagcaggtgagacaggaaaactggcagatgaagttcca
cttccatcagggttgatgccggaaccattaaaaactgctgatattataccatcacctcct
tcagcaaagactggtaattgggaggtacctgttgaggcaaatctggatggtcttgaacaa
gacatgactcagttgaatatgacagaacaaaactggaatcaagggcaaccccagttcata
ccaccacagggtttgcctaatcagatgcacattggagcagccccacctcctcagttcaac
aggatagaagacatgggggttcaagctgggcgtgcaaagcgctactcatcacagcgtcaa
aggcctgtcccagaacctgctccaccagtccatataagtataatggaagggcattactat
gatgcactacagttccaaggtccaatttatacacatggtgaaaatcctacaccgcttcct
cctcaaggggtgattgttcaaccagaaatgcatctttcacatccaggattgcatccacat
cagacacctgcacctctggctaatgctggcttatatcctcctcctgtctccatgccccct
ggacagcagccaccaccaccaccaccaccacaacagctgttagcaccaacctactttccc
cctcctggagtaatgaattttggcaatcccagttacccctaccctccaggaccccttcca
cctcccccgcctccccacctgtatcctaacactcaagctcagtctcaggtgtatggaggg
gtcacctactacaacacagttcagcagcaagtgcagcccaaaccttcacctccccgaaga
gcctcccaaccagttactatcaagccaccccctgagacagatttgcagtttcttcttggg
aaaagtgtcggagtaggtaagatatcacttcaagaaagagttacttctctgcaaacaagt
gcagtgggtaaggggcttcatactatcggctccaaagccatattaatgaaagagttctgc
tcttttcctccctctcatttttatctaggatggcagaaatga
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integrated database retrieval system
