KEGG   Telopea speciosissima (New South Wales waratah): 122661957
Entry
122661957         CDS       T07910                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03082  ATP-dependent chromatin remodeling
tss03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122661957
   03083 Polycomb repressive complex
    122661957
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tss03036]
    122661957
Enzymes [BR:tss01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122661957
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122661957
   HDAC complexes
    Sin3A-HDAC complex
     122661957
    BRAF-HDAC complex
     122661957
    REST complex
     122661957
    SHIP complex
     122661957
    MiDAC complex
     122661957
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122661957
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122661957
  Chromatin remodeling factors
   NuRD complex
    122661957
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 122661957
NCBI-ProteinID: XP_043713416
LinkDB
Position
1:23312139..23347651
AA seq 430 aa
MHSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFANELVKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEKEGKFYAINVPLKDGIDDASFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYSLKIPSGNLENMNSKSYLGTIK
MQVMESLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVDQHTQDKQIQRDDEYYEGD
NDNDHNMDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcattcgaaggacaggatttcctatttctacgatggagatgtaggcagtgtttacttt
ggtccaaatcatcctatgaagcctcatcgtctttgtatgacacatcatcttgtcctctcc
tatgacctccacaagaagatggaaatctatcggcctcacaaagcataccctgttgagctt
gctcagtttcattctgcggattatgttgagttcttgcaccggatcactcctgacacccaa
catctgtttgctaatgaattggtaaaatataatcttggagaagactgcccagtatttgag
aacttgtttgaattttgtcaaatttatgctggtggaacgattgatgctgcacgcagattg
aacaataagctatgcgacattgctataaattgggctggtggattgcaccacgcaaagaag
tgtgaagcttctggattttgttacatcaatgacttggtcctagggattctggaactcctc
aagtatcacgccagggtcctatatattgatatagatgtacatcatggtgatggagttgaa
gaagccttctatttcacagacagggtgatgactgttagttttcataagtatggggatatg
ttctttccgggaaccggtgatgttaaggaaattggagagaaagaaggaaaattttatgcc
ataaatgtcccattgaaggatggaatagatgatgccagctttactcgacttttcaaaaca
attatttccaaggttgttgagacatatctaccaggtgctatagttctccaatgtggggct
gattcacttgctggggaccgcttgggctgcttcaatctctccatcgatgggcattctgag
tgtgtaagattcgtgaaaaaattcaatttaccgttgttggttactggaggtggaggatac
acaaaagagaatgttgctagatgctgggctgttgaaacgggggttcttctggatactgag
cttcccaatgaaatcccagataatgagtacatcaaatattttgctcctgattattcatta
aagattccgagtgggaacctagaaaacatgaacagcaaatcttaccttggtacgataaaa
atgcaagtcatggaaagtctgcgttgcattcagcatgcccctagtgtacaaatgcaagag
gttccacctgatttctacatccctgattttgatgaagatgagcagaacccagatgaaaga
gttgatcagcacacccaagacaagcaaatccagcgagatgatgaatactatgaaggtgat
aatgacaatgatcacaacatggatgatgcttga

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