Telopea speciosissima (New South Wales waratah): 122662057
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Entry
122662057 CDS
T07910
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122662057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122662057
Spliceosome [BR:
tss03041
]
Complex B
Other components
Prp19-related factors
122662057
Complex C
122662057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_4
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
122662057
NCBI-ProteinID:
XP_043713549
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All DBs
Position
5:18245671..18252725
Genome browser
AA seq
473 aa
AA seq
DB search
MAHRLLRNLEADGWERADFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMTSLMAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEDLSNKLVIKGLRLKLMWGK
PQVPKPESENAEDEAVRQQGTVAHGGLLPRQVISQQQNQPPPPPGALDQQQQPIHYFNIP
PPLPPERNFYPSMDPQRMGALIPSQEGASSASGENKSGSEKQQQGGQHYPYQGMPPQPGH
YPQFYPPYGYMQPPPPPPYHYPPPYQSAVPPPLPPPAAQQYQPAGPPGSSQYQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctaaggaatctggaggccgatggttgggaacgcgctgatttcccc
atcatttgcgaatcttgccttggcgacaatccctacgttcgcatgacaaaagcggattat
gataaggaatgcaagatctgtacacgaccattcacagtttttaggtggaggccaggtcgc
gatgcgagatttaaaaagacagaggtctgccagacctgcagcaagctgaaaaatgtctgc
caggtgtgtctactggatcttgagtatgggttgccagttcaggttcgagatactgcgctg
gctatcaattcaaatgatgctatcccaaaaagtgatgtcaacagggagtactttgccgag
gagcatgaccgcagggctcgggctggcatagactatgaatcctcatatggaaaggtgcgg
ccaaatgacactatattaaagcttcagagaacaacaccgtattacaagagaaaccgggca
catgtttgcagtttttatgtacggggtgaatgcacaagaggtgctgaatgtccctatcgg
catgaaatgcctataactggcgagttatcacaacagaatattaaagatcgctactatgga
gttaatgatccagttgccatgaagcttctgaataaagcaggtgaaatgacatcattaatg
gcccctgaagatgagagcattaagaccctctacgttggtggtcttgatgctagggtaact
gagcaggatctgagggaccacttctatgcacatggtgagattgaatccgtaagaatggta
ctccagcgtgcatgtgcttttgtaacctatactactagggaaggtgcagaaaaggcagca
gaagacctctcaaataagctagtcatcaagggtctgaggctgaagctaatgtgggggaag
ccccaggttccaaaaccagagtcggagaatgctgaggatgaggctgtgagacagcagggg
actgtggcccatggtggtttgctgccaaggcaagtgatatctcaacagcagaatcaacca
ccaccaccaccaggggctttggatcaacagcaacaacccatacactacttcaatattcca
cctccacttccacctgagaggaacttttatccgtcgatggatcctcaaaggatgggagcg
cttatcccatcacaggaaggggcgagtagtgcgtcaggtgagaacaaatcaggttcagaa
aagcaacaacagggaggacagcattatccctaccaaggtatgccaccacagccaggccat
tatccacagttctatccaccttatgggtacatgcagccaccaccaccaccaccatatcat
tatcctccaccatatcagtctgctgtgcccccaccactgccacccccagcagctcagcag
tatcagccagccggaccaccaggatcttcacagtaccagtaa
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