Trachemys scripta elegans (red-eared slider): 117867274
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Entry
117867274 CDS
T07347
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117867274 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117867274 (COL5A1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117867274 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117867274
NCBI-ProteinID:
XP_034608062
LinkDB
All DBs
Position
17:18785511..19035387
Genome browser
AA seq
1839 aa
AA seq
DB search
MDTHTRWKRRSWIRTKTIAIFLLYAISQSKAAEPADLLKVLDFHNLPDGITKTTGFCTSR
RSSKGADVAFRVTKDAQLSAPTKQLYPASAFPEDFSILTTVKAKKGGQSFLISIYNEQGI
QQIGMEMGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIAISVQKKNVTLILDCKK
KVTKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLVVADPRAAYDYCEHYSPDCD
TAIPDTPQSQDPNQDEYYTEGDGESDTYYYEYPYYEDTDDTGKAEAPTAKPVDAEEAARE
VTEIKEELTSPTTQAPTVVENREETKEDEKVDDPIVDEYNYETINEEYYTPLPYEDLNYE
DIDTQDTLTEDAVEAEVPASTVITPNSTNAEVETGQGGDDQDKDFTEETIKEYDGNYYDT
YYDRTVSPEIGPGMPANQETEYEGIGGPRGEKGQKGEPAIIEPGMLIEGPSGPEGPAGLP
GPPGTSGPVGPLGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFTGGGDGGSKGPLVS
AQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDLGPQGPRGTQGPP
GPSGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGAPGDD
GERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPSGPPGVTGMDGQTGPKGNVGPQGEPGPP
GQQGNPGAQGLPGPQGAIGPPGDKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPT
GPQGPLGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGED
GPEGPKGRGGPNGDPGPLGPSGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR
GTPGKSGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFP
GPKGPPGPSGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPP
GPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPVGALGLKGSEGPP
GPPGPAGSPGERGPAGAAGPIGLPGRPGPQGPAGPAGEKGAPGEKGPQGPAGRDGIQGPV
GLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPIGPQGPLGQPGPAGADGEP
GPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS
GPPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGEAGPSGAA
GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPTGDKGDDGEPGQTGSPGPT
GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGESGLEGPPGKTGPVGPQGAPGKPGPDGLR
GIPGPVGEQGLPGSPGPDGPPGPLGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK
GDRGLPGPQGSSGSKGEQGINGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGHP
GPPGPPGPPGEVIQPLPILSSRRTRRNIDASQLVDEGNTDNYMDYADGMEEIFGSLNSLK
LEIEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGET
CIFPDKKSEGARITSWPKETPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASAN
QNITYNCYQSVAWQDATTGSYDKAIRFLGSNDEEMSYDNNPYIRAVLDGCATKKGYQKTI
LEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggatacacacacacggtggaaaagaagaagttggataaggaccaaaactatagcaata
tttctcctctatgcaatttctcaaagcaaagcagctgaacctgcagatctcttgaaggta
ttagattttcataatttacctgacggtatcactaaaacaacaggtttttgcacaagcaga
agatcttcaaaaggcgcagatgttgcttttcgagtaacaaaagatgctcaacttagtgca
ccaacaaagcagttatatcctgcttcagcctttcctgaggacttctccattctgaccact
gtaaaagccaagaaaggaggtcagtccttcttgatctccatttacaatgagcaagggatc
cagcagatcggcatggagatgggtagatctcctgtattcctgtacgaagaccataccggg
aagccaggcccagaagactatcctctctttcgaggcattaacctatcagatggcaagtgg
cacagaatagccatcagtgtacagaagaaaaatgtcactttgattttggactgtaaaaag
aaggtaactaagttcttggacagaagcgaccaccccatcattgatgtcaatggcatcatt
gtgtttggaaccaggatactggatgaggaagtctttgagggggacatccagcagctcctg
gtcgtggcagaccccagggcagcctatgattattgtgaacactacagccctgactgtgac
acagccattcctgacaccccccagtctcaggacccgaaccaagatgaatactacactgag
ggggatggagaaagtgacacctattattatgaatatccctactacgaggacaccgatgac
acaggaaaggcagaagcacccactgccaagcctgttgatgctgaagaagctgctagagag
gtgaccgaaattaaagaggagctcacctctccaaccacacaagcacctacagtggtggaa
aacagggaggagacaaaagaggatgagaaggttgatgaccccatcgtggatgaatataat
tatgaaaccattaacgaggagtactacactcccctcccttacgaggacctcaactatgag
gatatagacactcaggatacccttactgaagatgctgtcgaagcagaagtccccgccagc
acagtcatcacccccaattcaaccaatgccgaggtggaaacgggtcaagggggagacgac
caagataaagactttactgaagagacaataaaagagtatgatgggaattactatgatacc
tactatgaccgaactgtctctcctgaaattgggccaggaatgcctgctaaccaagaaaca
gagtatgaagggattggtggcccacgaggggagaaaggacagaagggagagcctgcaata
attgaaccgggcatgctcatcgaagggccatccggtcccgaaggtccagctggtcttcca
ggacctccgggaacttctgggcccgtgggtccactgggtgaccccggcgagagaggacct
cctggccggccaggtcttccaggagcagatgggttaccaggaccaccagggacaatgctc
atgctgcctttccgctttactgggggaggagatggtggctcaaaaggacctctcgtttca
gcacaggaatcccaagctcaagccatactgcaacaggccaggttggcgttgagaggacct
gctggccctatgggtcttactggaagaccaggccccgtgggacccccaggcagcggagga
ctaaaaggtgaaccaggagacctggggcctcagggtccacgaggcactcaaggcccccca
ggcccatcaggaaaaccaggccgcaggggacgtgctggcagcgatggtgcccggggaatg
ccagggcagacaggaccaaagggtgaccgaggttttgatgggttggctggtttgcctggt
gagaaggggcacaggggtgatccaggcccatcaggtccaccaggcgcacccggagatgac
ggggagaggggtgatgatggagaagttggacccagaggtctacctggagaacctggaccc
cgaggtttgctgggaccaaaagggccaccgggtccctcaggaccgccgggtgtgactggt
atggatggacaaacaggcccaaaggggaatgtgggtcctcaaggtgagccggggccacca
ggacaacagggcaatccaggtgctcagggtcttccaggtccacagggtgcaattggtcca
ccaggcgataaaggacctctgggtaaacctggtcttcctggcatgcccggtgcagatggc
cctccgggtcatcctggcaaagaaggtcctcctggtgagaaggggagtcagggtccaact
ggccctcagggcccacttggatatccaggacctcgtggcgtcaagggggcagacggtgtt
cgtggcttgaagggcaccaagggtgaaaagggtgaagatggcttccctggcttcaaaggt
gacatgggcatcaagggagaccggggtgaaattggtcctcccggcccacgaggtgaagat
gggcccgaaggtcctaaaggtcgcggaggtcctaatggagatccaggtcctcttggtcct
tctggggaaaagggaaaactcggagttccagggctcccaggttatccaggaaggcaaggt
ccaaagggttcaattggattcccaggattcccaggagccaacggagagaagggtggaagg
ggtacgcctggcaaatcaggtccaagggggcaacgaggtccaacgggtccacgtggtgaa
agaggtccgaggggcagcactggaaagcctggccctaagggcaactctggtggtgatggg
ccccctggtcctcctggcgaaaggggaccgccaggacctcaaggaccaactggatttcct
ggaccaaaaggcccccctggtccatcagggaaggatggattgcccggtcaccctggacag
agaggtgaaactggtttccaaggcaagacaggtcctccaggccctccaggtgttgttggc
ccgcagggtcctactggagagacgggtccaatgggtgagcgtgggcatccaggtccaccg
ggtccaccaggtgagcagggtctacctggcctggctggaaaggaaggaaccaagggtgac
ccgggacctgccggccttccaggaaaagacggccctcctggcttacgaggcttccccggt
gaaagaggtctccctggcccagttggagctcttgggctgaaaggcagtgaaggtccccct
ggtccaccaggaccagcaggttctcctggtgagagaggtccagctggggcagctggccca
attggtttaccaggaagacctggaccccaaggacctgcaggacctgctggagaaaagggt
gccccaggtgagaaaggtccgcaaggcccagccggtcgtgatggtattcaaggtccagtt
ggactcccaggcccagcaggtcctgttggccccccaggagaagacggggataagggcgag
attggagaaccaggccagaaaggaagcaagggtgacaaaggcgaacagggtccaccaggt
cctattggaccacaaggtccacttggtcaaccaggtccagctggagctgatggggagcca
ggtccaagaggacaacaaggcctctttggtcagaaaggtgatgaaggtcccagaggtttc
cctggtcccccaggcccagtgggcttgcagggtttgcctggaccacctggtgagaaggga
gaaacaggtgatgttggacaaatgggcccaccaggtccccctgggcccaggggtccatct
ggaccaccaggagcagatggtccacaaggtcctccgggtggaataggaaatcctggagct
gtcggagagaagggcgaacctggtgaagctggtgagcctggtcttcctggagagggtggt
cccccgggtcctaaaggagaaagaggtgaaaagggagaagcaggcccctccggtgctgct
ggtcctcctggtcctaaaggtccaccaggtgatgatggacctaaaggtagccctggtcca
gttggttttcctggtgatcctggcccccctggagaacctggcccagctggtcaagatggt
cccacaggtgacaaaggtgatgatggtgaacctggtcagactggatctcctggcccaact
ggagaaccaggcccatcaggtcccccggggaagaggggtcctcctggtccagcaggtcct
gaaggaagacaaggagagaaaggagccaagggtgaatctggtctggaaggacctcctggg
aagacaggtcctgttggtccccagggagctccagggaaacctggtcccgatggccttcga
ggaattcctggcccagtgggtgaacaagggctccccggttccccaggccccgatggtcct
ccaggcccactgggcccacctggtttacctggtcttaagggagattcgggtcctaaaggt
gaaaagggtcatccaggtttaattggcctcattgggccccccggtgagcagggagaaaag
ggggacagaggtctcccaggaccccaaggttcatccggatctaaaggagagcagggtatc
aatggtccttctggtccaattggacctccaggtccaccaggattaccgggtccccctggt
ccaaagggtgctaaagggtcatcaggtccaacgggtccaaagggtgaatctggccatcca
ggccccccaggacctcctggtcctcccggggaagtgatccagcccctgcctatcctgtcc
tccaggaggaccaggcgaaacattgacgcaagccaactggttgatgagggaaacaccgac
aactacatggattatgcagatggcatggaggagatctttggctccttgaactctttgaaa
ctggaaattgaacaaatgaagcatccgttgggcactcagcacaacccagctcgtacctgc
aaggatttgcagctttgccaccctgacttcccagatggtgaatactgggttgatcctaat
caaggatgttcaagggactctttcaaagtttactgtaacttcacagctggtggagagaca
tgtatcttccctgataagaaatctgaaggagctagaattacttcttggccaaaggaaacc
ccgggctcctggttcagtgaattcaagcgcggtaaactgctttcctatgtggattcggac
ggcaatcccatcggggtggtgcagatgactttcctgaggctcttgagtgcctccgcaaac
cagaacatcacctataattgctaccagtctgtagcatggcaggatgccaccacgggcagc
tacgacaaagccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaac
ccttacataagggctgtcctagacggttgtgcaacaaagaaaggctatcaaaagactatc
ctggagatcgacacacccaaagtagagcaagtacctatcgttgacatcatgttcaatgac
ttcggagaagcgtcacagaaatttggattcgaggtgggaccagcttgcttcatgggctaa
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