Trachemys scripta elegans (red-eared slider): 117869161
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Entry
117869161 CDS
T07347
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117869161 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117869161 (DDX42)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117869161 (DDX42)
Spliceosome [BR:
tst03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117869161 (DDX42)
Complex B
117869161 (DDX42)
Complex C
U2 SnRNP specific factors
117869161 (DDX42)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4238
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
117869161
NCBI-ProteinID:
XP_034611611
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All DBs
Position
23:8064547..8095345
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AA seq
954 aa
AA seq
DB search
MEKDIADIMNWNKGGPGTKRGFGFGGFAIAPGKKEEPKLPSQSHSAFGTPGSSAAFGKSA
PPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFNSKSGDSDSE
DDPLEAFMAEVEDQAARDMKRLEEKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPTAGV
VPEEEEDNLEYDSDGNPIAPSKKVIDPLPPIDHSEIEYPPFEKNFYEEHEEISSLTPQQI
VELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRD
MIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA
YNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRM
FDMGFEYQVRSVASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVT
QIVEILPSGPSKWNWLTRHLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDM
DQSERNKVISDFKKKGIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRA
GEKGIAYTLLTPKDSNFAGDLVRNMEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLN
IGGGGLGYRERPGLGSDGSDRGSSSSNVMSNYEAYKPSTGAMGDRLSAMKAAFQSQYKSH
FVAASLNNQKTGSSAAGASGWTSAGSLNSVPTNSAQQNAASPDSPIAAAAVKGIPGFTSA
GNLSSVPVYPGVGIQGYNSTSASINSREGGNGGGGGGGVGGGGSRERYSDNRSNRHNDSP
ARHGDGNGRHSDNQRHGDGGGRHSDGYRQGDNRHGDSHRHSESRHSSGGSNSSRHGDGRN
NGDGRNMGDGRNNEGRNNESRINENKKDGSNRDSKTDGFAVPEPPKRKKSRWDS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagatattgctgacatcatgaactggaacaaaggtggacctggcaccaaaaga
ggcttcggttttggaggatttgccatagcccctggaaagaaagaagaaccaaaactccct
tcgcagtcccatagtgcttttggaacacctggctcttcagctgcgtttgggaagtccgca
ccgcctcagctcccttctttctacaaaattggatcaaagcgagcaaactttgatgaggag
aatgcatactttgaggatgaagaggaagattccagcaatgttgatttgccatacattccc
gcagagaattcccccactcgccagcagtttaattccaaatcaggagactctgacagtgaa
gatgatcccttggaagcattcatggctgaagtggaggatcaagcagctcgagacatgaag
agacttgaagagaaagacaaggaaagaaagaatacaaagggtattcgagatgacattgaa
gaggaagatgaccaagaagcttattttcgctacatggcagaaaacccgactgctggtgtg
gtcccagaagaggaagaggataacttggaatatgatagtgatgggaatccaattgcaccg
tccaaaaaagtcatcgatcctcttccacctattgatcattcagagattgaataccctccg
tttgagaagaacttctacgaggagcacgaagaaatcagcagcctcaccccacagcagata
gtggaactacgacataagttgaatctacgggtctctggtgcagctccccccagacctggc
agtagttttgctcattttggatttgatgaacagcttatgcatcaaattcggaaatctgag
tatacccagcccactcctatacagtgtcagggtgttccggttgcattaagcggcagagac
atgattggcatagctaagactggcagtgggaaaaccgcagcctttatctggccgatgttg
atccacatcatggatcaaaaggagttggagccaggagatggtcccattgcagtgatcgtg
tgcccaaccagagagctttgccaacagatccatgctgaatgtaaacgctttggtaaggcg
tataacctgcgctcggtagcagtgtatggcggaggaagtatgtgggaacaagccaaagct
ctacaggaaggggcagagatagtcgtctgcacaccaggtcgcttgattgatcatgtgaag
aagaaagctaccaatcttcaaagagtctcttatcttgtgtttgatgaagcagacagaatg
tttgacatgggttttgaataccaagtgagatcagttgccagccatgtgcgccctgacaga
caaactctcttgttcagtgccacttttcgtaaaaagattgagaagttggccagagatatc
ctgatcgacccgattcgagtggtgcagggagacattggagaggcaaatgaagatgttacc
caaattgtggagattctgccctctggccctagcaagtggaactggctgaccaggcacctg
gtggagttcacttcttctgggagtgttcttctatttgtcaccaagaaagcgaatgcagag
gagctggccaataaccttaagcaggaggatcataacctagggctgcttcacggtgacatg
gaccagagcgaaaggaataaagtcatttcagactttaaaaaaaaggggatcccaattctg
gttgctactgatgtggcagctcgtggtctggatattccttccattaagacggtggtcaat
tacgatgtggctcgtgacatagacacccacacgcacagaattggacgtactggcagggct
ggtgagaagggaatagcttacactttactgactcccaaggatagtaattttgctggtgat
cttgtcagaaatatggaaggagccaatcaacatgtttcaaaagaactcttggacctcgca
atgcagaatgcctggttccggaaatcccgtttcaagggagggaaaggcaagaagctgaac
atcggcggtggtggcttaggataccgcgagcgccctggcctgggttccgatggctctgac
cgtgggagcagcagcagcaatgtgatgagtaactatgaagcgtacaagccatccactggg
gcaatgggagacagactgtctgcaatgaaagcagcatttcagtcacaatacaagagccac
tttgttgctgccagcttaaacaaccagaagactggcagctctgctgctggggccagtgga
tggaccagcgctgggagcttgaattcagtaccaacaaattcagcacagcagaatgcagca
agtcctgacagtccgattgccgctgctgcagtaaagggaatcccaggctttaccagtgct
gggaacctgagcagtgtacctgtctatccaggtgttggaattcagggatacaatagcaca
agtgccagcatcaacagcagagaaggtggcaatggcggtggtggaggaggaggagttggc
ggcggcggcagcagagaacgatacagtgacaacagaagcaatcgccacaatgacagtccg
gcgcgccatggagatggtaatggtcgccacagtgacaatcagcgccatggagatggtggt
ggtcgccacagcgatggctatcgccagggagacaaccgccatggggacagccaccgccac
agtgaaagccgccactctagtggtggaagcaacagtagccgacatggtgacggccgcaat
aacggtgacggccgcaatatgggtgacggtaggaacaacgagggtagaaacaacgagagc
aggatcaatgagaacaagaaagatggcagcaaccgggatagcaagacggatggttttgct
gtccccgagcccccaaagcgcaagaagagccgatgggacagttaa
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integrated database retrieval system
