Trachemys scripta elegans (red-eared slider): 117879549
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Entry
117879549 CDS
T07347
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117879549 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117879549 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117879549 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117879549 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117879549 (COL4A1)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117879549 (COL4A1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117879549 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117879549
NCBI-ProteinID:
XP_034630735
LinkDB
All DBs
Position
1:241022367..241241272
Genome browser
AA seq
1637 aa
AA seq
DB search
MRLWRGVGLVLAALLLSEEPGEVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFPGM
QGPEGPPGPPGIKGDTGEPGLPGTKGTRGPPGVSGYPGNPGLPGIPGQDGPPGPPGIPGC
NGTKGEIGPVGPPGLPGLVGLIGPPGSPGIKGDPGEVIGFLPSNVLKGEKGYPGLPGLPG
IQGLPGLQGPIGPPGISGVPGPPGPRGDPGEKGQMGLSFQGPKGDKGEQGELGTPGPVPH
DSKKEYILINGMTGEKGEKGDTGIKGDPGSNIKGEKGEPGKPGPRGKPGKDGEQGPKGNT
GEDGGFGVPGLPGDPGPKGDKGTQGLPGLPGRVIGTLDTYGEKGDIGPPGFPGLKGEQGE
KGLPGVPGYPGPPGLPSPGITGPPGFPGERGEKGDQGPPGRSLPGSTGRDGLPGPQGFPG
PPGPPGISSDKGDGCAFCDVSGLPGHPGPQGPPGPPGFPGQPGAKGDRGVPGLKGLEGVP
GSPGVRGLIGSPGAKGEPGDIYFDSNIKGDKGDPGFPGQPGVPGREGRPGRDGLPGVQGP
KGASGTIGLKGERGPPGSSGFPGVRGERGQPGLPGVGPAGPAGDKGDKGFPGNPGGPGRP
GPKGEAGQVIPLPGPPGSDGLPGPPGFSGIQGDRGDPGIPGKPGLPGEKGAIGQPGIGFP
GPPGPKGFPGQPGTSGQPGAQGRPGFDGLPGTPGLPGQKGDPGVGLPGPKGLPGPQGPAG
FPGEKGNAGLPGLRGEQGFPGVPGQPGIRGDPGSAGLPGSQGPPGVAGIGPPGPPGPAGG
PGPQGPKGFPGTKGERGYPGIPGLDMPGPKGDKGSSGQSGLPGLVGLPGAPGPQGKGGLP
GFPGIKGEMGVMGTPGIPGAPGPLGNPGLPGEKGTSGFPGTPGPPGDTGFKGSKGEVGLP
GEPGTIRETDMENMKGQKGDPGEKGQEGPIGEKGKTGDYGVPGMPGKDGEPGFPGLPGRK
GDQGPPGYPGDPGFPGQKGSIGEMGLPGTPGEKGVPGVPGSQGIPGYPGLQGAKGDKGES
GIPGVGIPGSPGEKGEQGRPGVPGFPGEKGEKGSAGIAGMPGHPGPKGLPGIAGYPGSPG
SQGEKGEKGLSGLDGIPGLKGEPGEPGSQGPSGVPGQKGEQGYDGIPGSPGAKGDPGIPG
RGLPGFPGAKGDKGAKGDVGFPGSPGSPGIPGSKGETGFVGPQGPPGQQGTPGIPGRSME
GPKGNRGPPGQPGLSGLPGPMGPPGSPGLEGAKGEKGNTGWPGPPGRLGIKGDPGFPGIP
GSAGLPGDIGQKGDMGPPGVPGFQGPKGSSGFPGLKGEQGDQGFPGSKGLQGPPGPPGPY
QLHKGEPGLPGPVGPVGPKGFPGLPGPKGQQGVTGPEGIPGQPGNPGFDGQPGQKGEPGP
SGPPGPRGARGPQGPEGLPGAMGPPGTPSVAHGFLVTRHSQTIEEPECPSGTKLMYYGYS
LLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMS
MAPITGDNIRPFISRCSVCEAPAMVIAVHSQTVQIPLCPEGWMSLWIGYSFVMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERNEMFKKPTPSTLKA
GDLRSNVSRCQVCMRRT
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgtggcgaggcgtggggctggtgctggctgcgcttctgctgagcgaggagccc
ggcgaggtgtccgccgcgggttgttctggctgtggaaaatgtgactgcagtggagtaaaa
gggcaaaaaggtgaaagaggtttgcctggtctacaaggtttaattgggtttcctggaatg
caaggacccgaaggtccccctgggccaccaggaattaagggtgatactggagaaccaggg
ctcccaggaacaaaaggaacaaggggcccaccaggtgtatcaggatatccaggaaaccca
ggtcttcctggcatccctggacaagatggcccaccaggtccacctggtatcccaggttgc
aatggcacaaagggtgaaataggtcctgttggtcctccaggtttacctggattggttggg
ttaataggacctccaggatctcctggaattaagggagacccaggtgaagtgattgggttt
ttaccatcaaatgtgctaaaaggtgaaaaaggttatcctggcctccctgggctaccaggt
atacaaggattgccagggctccaaggccccatcgggccaccagggatttcaggagttcca
ggtcccccaggcccacggggtgatccgggtgagaagggtcagatgggcttgagttttcaa
ggaccaaaaggtgataagggtgaacaaggagagctgggcacaccaggacctgtcccacat
gacagcaagaaagagtacattctcataaatggaatgacgggtgaaaaaggtgaaaaaggt
gatacagggattaaaggagatccaggctcaaatatcaaaggggaaaaaggtgaacctggg
aaacctggcccacgaggaaaacctggaaaagatggcgagcaaggaccaaaaggaaacact
ggtgaggatggtgggtttggagttccaggactaccaggtgaccctggtcctaagggagac
aagggcacacaaggtcttccaggacttccaggaagagtaataggtacactggatacttat
ggtgaaaaaggagacattggtcctccaggttttccaggattaaaaggtgaacaaggtgaa
aaaggtttaccaggtgtaccaggatacccaggtcctccaggtttacctagcccagggatc
acaggtccacctggcttccctggtgagagaggtgaaaagggtgaccaaggtcctccagga
cgctctctgcctggatcaactggaagggatggtttgccagggcctcaaggttttccaggt
cctccaggacctccaggcatatcaagtgataaaggtgatggttgtgccttttgtgatgta
tctgggcttcctggacatccagggccacaagggccaccgggtccaccaggctttccagga
cagccaggagccaaaggagacaggggtgtgcctggactcaaaggtcttgaaggggttcct
ggttctccaggtgtgcgaggactgattggtagcccaggagcaaagggagagcccggagat
atttactttgattctaatataaaaggtgataaaggagatcctggattcccagggcaacca
ggtgttcctggaagagaaggaaggccagggagagatggcctgccaggtgtccagggccct
aaaggggcatcgggtacaattgggctgaaaggagaacgtggtccccctggctcaagtgga
tttcctggggtacgtggtgaaagaggccagcctggtcttccaggggtaggacctgctgga
ccagctggtgacaaaggagataaaggctttccaggaaacccaggtggaccaggccgtcca
gggccgaagggtgaagcaggacaagtcattcctctgcctggtcccccagggtcagatggt
ctcccagggccacctggcttctctggaatccaaggtgacaggggggatcctgggattcca
ggaaaacctggacttccaggagaaaaaggtgctattgggcagccaggaataggattccct
gggcctcctggccctaaaggtttcccaggtcagcctggcacatcaggtcagccaggggct
caagggcgtcctggctttgatggtttaccaggcacaccaggtttacctggtcaaaaaggt
gaccctggagtgggtctcccgggtcctaaaggattaccaggcccacagggcccagctggc
ttccctggagaaaaaggaaatgctggtttgcctggcttacgaggagagcaaggatttcca
ggtgtacctggtcagccaggaatccgaggtgacccaggttcagctggattaccaggttca
caaggtcccccaggtgtggcaggaataggccctccagggccccccggacctgcaggagga
ccagggccacagggaccaaaaggatttcctggaacaaagggagagaggggctacccaggt
atcccaggactagatatgccaggaccaaaaggagataagggtagctctggccagagtgga
ctaccaggtctggtaggtttacctggcgcacctggtccacaaggaaaaggtggacttcca
ggctttccaggcatcaaaggagaaatgggagttatgggaacccctggaatcccaggtgct
cccgggccactaggaaatccaggattaccgggtgaaaaaggtacttcaggttttccaggt
acgccagggccaccaggtgatactggtttcaaagggagtaaaggtgaagtaggtctacca
ggagaaccaggaaccataagggaaacggacatggaaaatatgaaaggccaaaagggagac
ccaggagaaaaaggacaagaaggaccaataggagaaaagggaaaaacaggggattatggt
gtaccaggaatgccagggaaggatggtgaacctggcttcccaggacttccaggacgaaaa
ggtgatcaaggccctccaggatacccaggtgacccaggatttccaggacaaaaagggtca
attggagaaatgggtttgccaggaacacctggagaaaaaggtgtaccaggtgtgccaggc
tcacaaggtataccagggtaccctggattacaaggtgcaaaaggagacaaaggagagtcg
ggtattccaggggttggcattccaggttctccgggtgagaagggagaacaaggaaggcca
ggtgttccaggcttccctggtgaaaaaggtgaaaagggtagtgcaggaattgcaggaatg
cctggtcatccaggtcccaaaggattacctggcattgcaggatatccaggcagcccaggt
agccagggagaaaagggtgaaaaaggactctctggtttggatggcattccaggtttaaaa
ggagaaccaggtgagcctggttctcaaggtccctctggtgtccctggacagaaaggtgaa
caaggttatgatggaattccaggttcgcctggagcaaagggtgatccaggtattccaggt
agagggcttccaggatttcctggtgcaaaaggagataaaggtgcaaaaggtgatgtgggt
tttccaggatccccaggaagcccggggattcctggctcaaaaggagaaacaggatttgtt
ggtccacaaggtcctccaggccaacagggcactcccggaataccagggagatcaatggaa
ggtcctaagggaaacagaggacccccaggtcaacctggactttcaggtctaccaggtcca
atgggaccaccaggatctccgggcctggaaggagccaaaggagaaaaaggaaacacgggt
tggcctggaccacctggaagacttggaatcaaaggtgatccgggattcccaggcattcct
ggtagtgctggtttaccaggagatattggtcaaaagggtgatatgggacctccaggagtt
cccgggtttcaaggtccaaaaggatcttctggcttcccaggtctcaagggagaacaaggt
gaccaagggtttcctggctctaaaggtttacaaggtccaccaggtcctccaggtccatat
cagcttcataaaggggaaccaggtttacctggacctgtcggaccagttggtccaaaaggg
ttccctggacttccaggtccaaaaggacagcaaggagtgacaggacctgagggtataccc
gggcaacctggtaatccaggatttgatggtcaacctggtcagaaaggagaacctggtcct
tctggtcctccaggtccacgaggagccagaggtccacaaggccctgagggtttaccaggt
gctatgggcccaccaggcacaccatctgtcgctcatggcttccttgttaccagacacagc
caaaccattgaagaaccagaatgtccatctggaactaaactgatgtactatggctactcc
ttactttacgtacaaggcaatgaaagggcacatggtcaggatttgggcacagcagggagc
tgtcttcgtaaatttagcactatgccattcttgttctgcaacatcaataatgtatgcaac
tttgcatcaaggaatgactattcctactggctgtctactcctgaacccatgccaatgagt
atggcacctatcactggtgacaatatcaggccattcatcagtagatgctctgtgtgtgag
gctcctgccatggtaattgcagttcacagccaaacagttcaaataccattgtgcccagaa
ggctggatgtcgctttggattggttactcctttgtaatgcataccagcgctggtgctgag
ggttccggacaagctctggcatctccaggttcctgtctagaggagttccgcagtgctccc
ttcatagaatgccatggtcgtggaacttgtaactattatgcaaatgcttacagcttttgg
cttgccactatagagagaaatgagatgttcaagaaacctactccttcaactctgaaagca
ggggacttgcgctcaaacgttagccgttgtcaagtctgtatgagaagaacataa
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integrated database retrieval system
