Trachemys scripta elegans (red-eared slider): 117879893
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Entry
117879893 CDS
T07347
Symbol
MBD4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117879893 (MBD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117879893 (MBD4)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117879893 (MBD4)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
117879893 (MBD4)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
117879893 (MBD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
117879893
NCBI-ProteinID:
XP_034631296
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All DBs
Position
7:complement(18534529..18544592)
Genome browser
AA seq
665 aa
AA seq
DB search
MRTNPKALCLESTGTTRGGGKGKDRNSNVESGLRMRHKRAHGHCACARGKVLRKREALGG
TVFGIRMRKRRTVLCRAVLAGEPLRALGGIVYWREALWVCASDKSDMQIGKKTKEEGKEL
VTETREYFGLQIEGTETIAENTLQCEEDVAAVSEVASRCLKNIPDGWEKITKQRQSGKTA
GKYDVYFISPQGAKLRSKRALGAYFSKNGETVLKPEDFDFTAPVQSKTRSRAKGFGAEAV
GPRLQNKECNSKAQDLSVQSSKEELKVLELQTSNEQLENISIHLQGRGDLVIKDIKPKDY
CKKAKEKGAVGRRAQIKKARKGSEKRNPDHSQNKRQRKASCNNQEAEGSQIKKIRQKKNV
CVSDRGRIDNQKLNPTDTGKANTLSEDEIMTSGSQSEMHLGPVTALSETESRTMELLGYA
EKSSGDAAATKSDKNIAEREGSGVFAKEKDWVHSGNQDFKPGTETDISISQPCDKTSFTS
VKILQEDYVPRTQVERRKTSPYFSSKYSKEAPSPPRRKAFRKWTPPRSPFNLVQETLFHD
PWKLLIATIFLNKTSGKMAIPVLWEFLEKYPSPEVARTADWKEMSELLKPLGLYELRAKT
IIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKEVHPQDHKLNTYQAWLWENHE
KMSLN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcgcactaaccccaaagccctttgcttggaatcaaccggtacgacgcgaggaggcgga
aagggaaaggatagaaactcaaacgttgaatcaggattgcgcatgcgccataaacgcgcc
catgggcactgcgcttgcgcaagggggaaagtactgcgcaagcgtgaagctctcggcggg
actgtgtttggaatacgcatgcgcaagaggcggactgttctgtgtcgggctgttcttgcg
ggagaacctctgcgcgcccttggcgggatcgtatattggcgagaagctctgtgggtgtgt
gctagtgacaaaagtgacatgcaaattggaaagaaaacaaaagaagaggggaaagaatta
gtgacagagacaagagaatattttggtctacagattgaaggtactgagaccatagcagaa
aacacactccagtgcgaagaagatgtagctgctgtgtcagaagtggcttctagatgtctc
aaaaacattccagatggatgggagaagatcacaaagcaacgacagtcaggcaaaactgca
gggaaatatgatgtttatttcatcagtcctcaaggagcaaagttaagatccaaacgtgca
cttggggcgtattttagtaaaaatggagagactgttcttaaaccagaagattttgacttt
actgctcctgttcagagcaaaactcgatcaagagccaaaggattcggtgcagaagctgtg
ggaccaagattacagaataaagaatgtaacagtaaagcacaagatcttagtgtgcaaagt
agtaaagaagaacttaaagttttggagttgcagaccagtaatgaacagctagaaaacatt
tccatccatctgcaaggcaggggggacttggtcattaaagacattaagccaaaggactat
tgcaaaaaggccaaagaaaaaggagcagttggaagaagggctcaaattaagaaagctaga
aaaggctcagaaaagaggaatccagatcacagccaaaataaaaggcagagaaaagcatca
tgtaataatcaagaggctgagggcagccaaatcaaaaaaatccggcaaaagaaaaatgtt
tgtgtttctgatagaggcagaatagacaatcagaaattaaaccccacagatactggaaaa
gcaaacacactttcagaggatgaaataatgacttcaggatcacaatcagagatgcatctt
ggaccagtaactgctctctcagaaacagagtcaagaaccatggaactattaggatatgca
gagaagagttctggtgatgcagctgctacgaaatctgacaagaacattgcagaaagagaa
ggatcgggtgtgtttgcgaaagagaaggattgggtgcattcgggtaaccaggatttcaaa
cctggcactgaaacagacattagcatttcacagccgtgtgacaagacaagctttacatca
gtgaaaattctgcaagaagactatgtcccaagaacacaagtagagagaaggaaaaccagt
ccatatttttctagtaaatacagtaaagaagctccaagcccaccaagaaggaaggccttc
aggaaatggactcctcctcggtctccatttaatttggtccaagaaacgctcttccatgat
ccgtggaagctcctcattgcaaccatatttctcaataagacctcaggtaagatggcaata
cctgtgctctgggagtttctggagaaatatccttcccctgaggtagcaagaaccgcagac
tggaaagaaatgtcagagttacttaaacctcttggcctctatgaactcagagcgaagacc
attatcaaattttcagatgagtatctgaccaagcaatggaggtatcctattgagctgcat
gggattggaaagtatggcaatgattcatacagaatattctgtgtcaatgaatggaaggag
gtacatccacaagatcacaagttaaatacgtaccaagcctggctctgggaaaaccatgaa
aaaatgagtcttaattga
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