Trachemys scripta elegans (red-eared slider): 117883503
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Entry
117883503 CDS
T07347
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
117883503 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117883503 (SLX4)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117883503 (SLX4)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
117883503 (SLX4)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117883503 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117883503
NCBI-ProteinID:
XP_034638668
LinkDB
All DBs
Position
10:complement(32889303..32930401)
Genome browser
AA seq
1873 aa
AA seq
DB search
MDELDNDFKELCANLLSRVKKKAGDAEGGRKVQSRTRSTATKSKLKKSKSTAKSKSQHDS
SAGKRMGWPGCTDPNEQALGHEPEGEAAACGNDGPPLGDENGDPPAIQLDAMVPNCSQNT
LAGSDKRRSPFAAAAAEPATSTSSPAKTLQISGTRLRVAELVLERMQQFKRVEPKQLKHT
RGSSLLETVTDGNIPDVIQEKNQPGNVTTPDLPVKESDVALAVALQQELKEEVPGSLEEA
GLFFCQICQKDLSAMNATRREQHVNRCLDEMEKSQVSSSSNPQIPECPICGKQFHTPKSR
ASHLKRCAVKMEVPPQLLLQAVQSQALALGDGLPVAPSSQLSRSKRKGSSKEKESKKKRK
TSKVETKDEDLLVAMAMSRSLLEQIRQEQAKSVTTIKLESALPIKWKPGAEKKRRKNVPR
TPPPLLLQDPETAHKRIQSRMAMLLTEEVEFPSTPPLPASRILEEEPGKAAWLLSLPKDQ
RCILWEYSTLTGPCVPESFYAVGLTPPILPWKPVQQLQTSSNHPDPASVGLGNRTTDDPQ
ADPDGEQQFLSCSQKDVQTLQDLVELAGEGLTLTQWNIDIDHTSEVKQLRGESVASDIPL
SGFVPPSKVKMCQSSNLHTSSLRSLAADFSGMVNNPHLSDVQFQVDSGEVLYAHMFVLYA
RCPQLTEVVHSEGFLVEEDGNLRTRRVLLSEVTVEAARAFLQYLYAADISIPAQVLSDVG
ALAVRFDVSELISVCGNSPGETEEHAVVDSGDELFSVGEEENCDNRAENFQELLRSMWVD
EDEEEVALLKPEDQEEEDNEKVDEQELEEIYEFVATQRKIVQDEAEVEEGTGSCTHSETE
EAQNVNQQTEDEEVEVCESPSTSSKIKEWKENFRVGRSSCESPGQEKKIPGISRSESMSV
TQIAPVHLQDKPCECGDVAASHGRASDEREGSQRMPKVVKVSRFSQISQGEEENDAWEKM
FPSCRHNGADLSKSYDPMFSATQGEHCEPSPLNEDNKESGEIFSETHVEVNKPPIHHQSQ
KDLLSVRSDLCSSPLINPCSPVLPAVGSSPMSPESNRTFSRVSTEISPISAPKQNKNKGL
FQSDDASFQKASEQNDASGFEKIIKNTLSPAKFPHVDLKKQKHVPTGSSLVHTTQNSASH
VNQEAEVILLLDSDEEMELEQMKKKSDSESSLREMEISRRLDCNCKKVQQEHNVPKSGPV
SVADIEIHQRQFQVSLGSQDKMHSENAVKLSGEMPLNNQVGTCIDSRLILSHEESSSMDT
SWLVPDTPLLTRSRNCSTQTQATSICCLRSQGYKHRTTALLVNTSDHKQAGETMKIPEIT
SDLLLATSSQKHLLTENSSVSKKTSPGSPLGQSWKDSLRVSPAPVSPACVRVKEKSSENP
SSPIRGLPCRELSLENKTDISVVEVEDSEEEKEVAPLPSSGSFLLGDEPPIPVDDDCWSV
EHLSPVKDNNRVLERLDCANTSSPTRGKSGSQHNQWKSPIRALEITGSTPLRGNPIDNRK
TLFCHEESPIEAHSSVSNRLSFRNSKVWDDWDEDELPEILPLTQRVSAAAAAQNTQPLKT
PDPVCHKRNQPPRVPITPVPAYSIMETPELKKELNRFGVRPLPKRQMVLKLKEIFQYTHQ
IMSSDSEDEIPSSQPPLQKATAKYPSQPQADLIELREESSKASSVGRKQKLGVSVPSLPV
LGSGDADNSAGPSTTGYLRTKKTAETKGHPGGARGIKGDTLSPATSPVKGSLVGSADGQV
LSASQESAASSVAGSDNSFESQSSSSNEFETGALTSEEDEGIPASQAAAREADKLEAVRR
YIHSNPVLHQKILLYQPFELTGLQAELKQNGIKIALGKLLDFLDAHCITFTTAGARKEKQ
QQCGGKKKGCKRY
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctggacaatgattttaaagaactctgtgctaacctattgagcagggtcaag
aaaaaggctggagatgccgagggagggaggaaggttcagagcaggacaaggagcactgca
acaaaaagcaaattaaaaaagagcaagtcaactgctaagagcaaaagccagcatgactcc
tctgcgggaaagagaatgggctggccagggtgcacggaccccaatgagcaggcattgggg
catgaaccagaaggtgaagctgcagcctgtggaaatgatgggcctccactgggagatgaa
aatggagaccctcctgccattcagttggatgctatggtaccaaactgtagccagaacacc
ctggcaggcagtgacaagcgcagatcaccctttgctgctgctgctgcagaaccagcaacc
tccacctcatcccctgcgaagacgctccagatctcaggaaccaggctgcgggtagcagag
ctggtgctggagaggatgcagcagtttaagagagtggaaccaaaacagctgaaacatacc
cggggcagcagcttgctagagacggtaacagatggaaacatccctgatgtgatccaggag
aagaaccagccagggaatgtgaccactccggatctgcctgtgaaggagtcagatgttgct
ctggccgtggccctccagcaggagctcaaagaagaagtacctggaagtctggaagaggca
ggcttatttttttgtcagatctgtcagaaggacctctcagccatgaatgcaacacgacgg
gagcagcatgttaacaggtgtctggatgagatggagaagtcacaggtgtcttcttccagc
aacccacagatccctgagtgccccatctgtgggaagcagttccatactccaaaaagccga
gccagtcacttgaaacgctgcgctgtcaagatggaagtccctccgcagttgcttctccag
gcagtgcaatcgcaggcattggccctgggtgatgggctccctgtagcacccagcagtcag
ctcagtaggtcaaagcgaaaaggctcctccaaagagaaggagtcaaagaaaaagcggaag
acgtccaaggtggagaccaaagatgaggatcttctggttgccatggcaatgtcacgatct
ctgctggagcaaataaggcaggagcaagcaaaatcggtaacaaccattaaactggagagt
gctttgccaatcaagtggaagcctggagcagagaaaaaaaggcgtaagaacgtcccccgc
acaccacctccattgttacttcaagatccagagacagcccataaacggattcaaagccgg
atggccatgctactaacagaggaggtggagttccctagcacccctccactccctgccagc
aggattttggaggaggagcctgggaaggcagcctggcttctgtctttgcccaaagaccag
cgttgcattttgtgggagtatagtactttgacaggaccctgtgtcccagagtccttctat
gcagtgggattaacccctcctattttaccttggaaacctgtgcagcagttacagaccagc
agcaaccatcctgatcctgcttctgtggggcttggaaacagaactactgatgatccccag
gcagaccctgatggagagcagcagtttctatcttgcagccagaaggatgttcagactctg
caggacctggtggagctggctggggaaggacttactctcacgcagtggaacattgacatt
gaccacaccagcgaagtgaagcaactgagaggagaatcggtggccagcgacattccactt
agtggcttcgtccctccatccaaggtgaagatgtgccagagcagcaaccttcacacatcc
tcactcaggtcgctggctgccgatttcagtggaatggtcaacaacccccatctaagtgac
gtccagttccaggtagacagtggggaagtcctttatgcccatatgtttgtgctttatgca
cggtgcccacagctgactgaagtcgttcacagtgaaggtttcttagtggaagaggatggg
aatttgcggacccgtcgagtgttgctgagtgaagtgacggtcgaggcagcccgtgcattt
ctgcagtacctctatgcagctgatatcagtatccctgcacaggtgctctctgatgtggga
gctcttgctgtcaggtttgatgtgagtgaactgatctctgtatgtggaaacagccctggg
gagacggaggagcatgctgtggtggactcaggagatgaacttttctctgtgggggaagaa
gaaaattgtgacaacagagctgagaatttccaggagctcttgaggtcaatgtgggtagat
gaagatgaggaagaagtagctttgctgaaacctgaagaccaggaagaggaagacaatgag
aaagtggatgagcaggaactggaggaaatttatgagtttgttgccactcagcgaaagatt
gttcaagatgaggcagaggtggaagaaggcacaggcagctgcactcacagtgaaacagag
gaggcccaaaatgtgaaccaacagactgaggatgaagaggtggaggtgtgtgaatctccc
tcaacaagcagcaagattaaagaatggaaggaaaactttcgtgtgggaagatccagctgt
gaatcgcctgggcaagaaaagaaaatcccaggtataagtaggagtgagagcatgagtgtt
acacaaatcgctcctgtgcacttgcaggataagccttgtgagtgcggtgatgttgcggct
tcccatggtagagcctctgatgaaagagagggctcgcagagaatgcccaaagttgtgaag
gtttctagattctctcagatttcacaaggtgaagaagagaatgatgcctgggaaaaaatg
ttccctagttgtcgacacaatggtgctgacctcagtaaaagttatgatcccatgttttcc
gcaacccaaggggaacattgtgagccttctccactaaatgaagacaacaaagagtcagga
gagattttcagtgaaacacatgttgaggttaataaaccacctattcaccatcagtcacag
aaagaccttctgtcagttaggagtgatttgtgtagcagtcctcttatcaacccttgctca
ccagttttgccagctgttggttcatcacctatgtctccagaatcaaataggacattttcc
agagtatccacagaaatttctcccatatcagcaccaaagcaaaataaaaataaaggactc
tttcagtctgatgatgcatccttccaaaaagccagtgaacagaatgatgcttcaggattt
gagaagatcataaagaacacactttctccagcaaagtttccccacgttgatttaaaaaag
caaaaacacgtcccaactggctcatcattggtccacacaactcagaatagtgcttctcat
gtgaaccaagaggctgaagttattcttttgctggattctgatgaagaaatggagttagaa
caaatgaagaagaaatcagattctgaatcttccctgagggaaatggaaatctccaggcga
ttggattgcaactgtaagaaagtgcagcaagagcacaatgtaccaaaatctggacctgtt
tcagttgctgacattgaaatacaccagagacaatttcaagtctcactaggaagtcaagac
aagatgcacagtgagaatgctgtaaagctgtcaggagagatgcctcttaacaaccaggtt
gggacctgtattgatagcagactgattctgagccacgaggagagctctagcatggacacc
tcatggttggtgccagacacacctcttcttaccagaagcaggaactgctcaacacagacc
caggcaacaagtatatgctgtttgaggagtcaggggtataagcacaggactacggcttta
ttggtaaatactagtgaccataaacaagctggggaaactatgaagattccagagataact
tcagatctgttacttgcaacttcctcacaaaaacatttgcttacagagaactcctcagtc
agcaaaaaaacctctcctggcagccctttaggtcagtcttggaaggattctctgcgagtt
tctccagctccagtctcacctgcctgtgttcgtgtgaaagagaagtcttcagaaaacccg
tcttcacccatacgaggccttccatgccgtgagctgtctctggagaataaaacagacatt
agtgtggttgaggtagaggacagtgaggaggaaaaggaggtggctccactcccttcgagt
ggcagcttcctgctcggtgatgagccaccaatcccagttgatgacgactgctggagtgtc
gaacatctgtcaccagtcaaagataacaacagggtgcttgagaggttggactgtgcaaat
accagcagtcccacccgtggaaaaagtggctctcagcacaaccaatggaagagcccaatc
agagccctggaaattacaggtagcactcctcttcgaggaaatcctattgacaatagaaag
accttgttttgtcatgaagagagtcctattgaggcacattcttcagtgagcaataggtta
agttttcggaactctaaagtctgggatgattgggatgaagatgaactcccagagattctt
cctctcacacagagggtgtcagctgcagcagctgcccagaatacccagcccctaaagact
cctgaccctgtctgtcacaagagaaaccagccccccagagttcccataacaccagtacca
gcttactccatcatggagaccccagagctgaagaaggaactgaacagatttggagtccgt
cctctcccaaaacggcagatggtgttaaagctgaaggagatattccagtatactcatcag
atcatgtcctctgactcagaggatgagatcccatcctcccaaccacccctacagaaagcc
actgccaagtaccccagccaaccccaagcagacttgattgaactgagagaagagagttcc
aaagcctccagtgtagggcgcaagcagaagctgggggtttcggtcccttccctgccagtt
ctgggcagtggtgatgctgacaactcagcgggcccctctacaacaggctatctgaggact
aaaaaaacagctgaaactaaaggccacccaggaggagccagagggataaagggagatact
ttgtctccagctacatctccagttaaaggttctctggtgggcagtgctgatggacaggtg
ctctcagcatctcaggagtctgcagcttcttcagtggctggaagtgacaactcctttgag
tcacagagttcttcttccaatgagtttgagacaggtgcccttacatctgaagaggacgaa
gggatcccagcatctcaggctgcagcccgggaggcagataagctggaggcagtgagacgc
tacatccattcaaatccagtcctgcaccagaagatcctcctttatcagccctttgagctg
actgggctgcaggccgagctgaagcagaatggcattaagattgcactgggaaaattgctg
gactttttggacgctcactgtatcacctttaccacggctggggcacggaaagagaagcag
cagcaatgtgggggcaagaaaaagggatgcaaacgatactga
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integrated database retrieval system
