Trachemys scripta elegans (red-eared slider): 117883957
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Entry
117883957 CDS
T07347
Symbol
SYNM
Name
(RefSeq) synemin
KO
K10376
desmuslin
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tst04812
]
117883957 (SYNM)
Cytoskeleton proteins [BR:
tst04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type VI
117883957 (SYNM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Motif
Other DBs
NCBI-GeneID:
117883957
NCBI-ProteinID:
XP_034639804
LinkDB
All DBs
Position
10:77174524..77198444
Genome browser
AA seq
1707 aa
AA seq
DB search
MLRSREEEWDEKTQLRELNSRLRLYVSRVRELEQENRLLAQELAELQQQELVGLRGPPQE
LAELRRSVAELSRAKREAELERDGLRQELGQLQRLGAEVLQLRRRLAPELAGQRQLLERL
WGECAALEQLLQGLRAEHGQLLERQRREAGEVRALRLDLAALPPPLAALSLEQLEETYEL
VLGQACRESLLRYQSQLRALHEREARLGRESLEQLRAEGARCRLQRDELRRQGQQLGGLG
QRLEEELLALQELHGAEADEYQRIIDALEEEKQFLTLSIMDYLKDYNELMQVKAGLSLEV
ETYRTLLEGESSQWIITWIDQQGRKIPQGVRNTSYDYTNSYSAYREENKKKSFPIIKSAD
TRHKTPVTNIRSSALYSTQTRRGGPRTTDSGKVLRKDILSSEYHPSTTIEKDATYERTMK
DHREFKTFTPSYGLWGDTEIHRKTFPERKRTEATTTSAISFSKELTSVQSSNKDHKVDTR
SGVSESTRTKPDNFTKFPSYELNSNFKQTKYEQTLDDTRTILKEKTKGDKPVKEGENGLL
EEKDKQPVNEERNIVLEKKEMDDKPTTAERSVNFGKKTEVKPEQKTHIMEEVIINDNKKI
FSGVRSKEDSTAKEGKNVTWEEQTRVHKSAREGEFFLPDAKIKEDELTKRNTNVFLESRS
KEAVEIPISVEMYTPDKILQNSNTEITFQGFKTSVERKTDEHTIEPVEILNVNVSEKEPN
LEDEHGISDKGSPRMGTLSTENIAETIVADILKSFVQSSGSETTPHTKVNYLEKKKQDDE
KETTEITVQSQVQEEISISDEVDLGSLLNKDGKVVLEDAKGIPSKDVIEDIINVGLKGRD
SIGKVSVNVEIVEEPLEFATDERSEFSTPFEVEEVEDTSPGMEQHYGDEGEQNITATAED
FKKKKQSSEILTHVEEVTEADDSIDEQKYFVSTPDDYGKDDDSVYGQIHIEEESTIKYSW
QDEFLRGTQRRKDDSMSSPEQTYQVVGEEASAYVLNEEHPKGEASHAESIVIEKEIKIPH
EFQASIKGLLLKETKDPKQQLKEALEQLEGSLPESVKEELAALTKENHADSSSLAVDIKK
VEQPNEDGLVTIVAEVNLSQTLDTDQFDIAQLGGIITGEIEKVSLKSPKQEGFDERNDPE
LERQTDGKSSIETNISPSSNKSTPWASQGVYSSSSVRSTDGMEYHSTEQVIREGPVSEAV
KFGNVEEVSQSQVSTDTNKSIRHIKIGPTEIRRTEQVIYEGPISETLELGGRGDLVQTKG
SLDTGRSVKLFKMGPKEIQTTEEIIYKGPVTKTVAVDEPENLAQPQFSADINRSMRHITL
GSQQITEDIIFKGPISDSLELSSSGDLSHTEGSTDTNRSVRHIRLSPKEIHTEQIIFEGP
ISGNVELSGTEDLSQTGSSIRHIKLGQKEMHSAEKITYEGLLSEKAELGNMGDSSQMEHR
SDTNASIRHIKLGPKEFMTTEQIIYKGPISEHLEFSESGDNFHSEGSIKHITLGQKEIKT
TEQVVYQGSISESPEISSAGGSLSESEGNSDINRSIRLIKVSPTETHTEQIIFTGPISET
MGDHFQTEGSSESSQSIRHIKLGPQETSFTFQMDVTNVAGVPVVEGRTQAATVTVSNRKE
PDVRQSQVVVESDQKDTDRESTKEASVFLDASQAHGEQVTEKSAFEKSVQLQRLVDQRSV
ISDEKKIALVYLDKEEEGEEDNDGDWF
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgctcccgggaggaggagtgggacgagaagacccagctgcgggagctcaactcc
cggctgcggctctacgtgtcccgggtgcgggagctggagcaggagaaccggctgctggcc
caggagctggccgagctgcagcagcaggagctggtcgggctgcggggccccccgcaggag
ctggccgagctgcggcggagcgtggccgagctgagccgggccaagcgggaagcggagctg
gagcgggacgggctgcggcaggagctggggcagctgcagcgcctgggcgccgaggtgctg
cagctgcggcgccgcctggcccccgagctggccgggcagcggcaactgctggagcggctg
tggggcgagtgcgccgccctggagcagctgctgcaggggctgcgggccgagcacgggcag
ctgctggagcggcagcggcgggaggccggcgaggtgcgggcgctgcggctggacctggcc
gcgctgccgccgccgctggccgcgctcagcctggagcagctggaggagacctacgagctg
gtgctgggccaggcctgccgggagagcctgctccgctaccagagccagctccgcgcgctg
cacgagcgggaggcgcggctgggccgggagagcctggagcagctgcgggccgagggcgcg
cggtgccgcctgcagcgggacgagctgcggcgccagggccagcagctgggcggcctgggc
cagcggctggaggaggagctgctggccctgcaggagctgcacggcgccgaggcggatgag
taccagaggataattgacgccctagaagaagaaaagcaattcctgactttgtcaatcatg
gattacctcaaggactacaatgaactaatgcaggtgaaagcgggactcagccttgaagtt
gaaacttacagaactttactagaaggggagagcagccaatggattatcacatggattgat
cagcaggggagaaaaataccacaaggtgtcagaaatacatcttatgactacactaatagt
tactctgcataccgagaagaaaataaaaagaaaagctttccaattatcaagagtgctgac
actagacataaaacaccagtaacaaatattcgcagctctgcactttattcaactcagaca
aggcgtggtggaccacggacaacagatagtggaaaagttttaaggaaagatattcttagt
tcagaatatcatccatcaaccactattgaaaaggatgccacttatgaaagaactatgaag
gaccatagagagttcaaaacctttactccatcatatggtctttggggagacactgaaatt
catcgaaaaacatttcctgaaagaaagagaacagaagctacaactacttcggcaatttct
ttttcgaaagaattgacaagtgttcaaagttcaaacaaggaccacaaagttgacacaagg
tcaggtgtttctgaaagtacaagaacaaaaccagataattttactaaatttccatcttat
gagctgaattccaattttaaacaaaccaaatatgaacaaaccctagatgacactcgtact
atattgaaagaaaaaacaaaaggagacaaaccagttaaagagggagaaaatggcttgtta
gaagaaaaagataagcaaccagtcaatgaggaaagaaatattgtcttggagaaaaaggaa
atggatgataaacccactacagcagaaagaagtgttaattttggaaagaagactgaggta
aaaccagagcagaaaacacatataatggaagaagtgattattaatgataacaaaaagatt
ttttcaggagtcaggagtaaggaagatagcactgccaaagagggaaaaaatgttacatgg
gaagaacaaaccagagtacataaatcagccagagagggagaattttttctccctgatgca
aagattaaagaagatgaattaaccaaaaggaatacaaatgtgttcttggaatcaagaagc
aaagaggctgttgagatacccatcagtgttgaaatgtatactccagacaaaatattgcag
aacagtaacacagaaataacatttcaaggctttaaaacctctgtagaaagaaagacagat
gaacatacaattgaacctgttgaaattctcaatgtgaatgtttcagaaaaagaacccaat
ttggaagatgaacatggaattagtgacaaaggtagccctagaatgggtactttgtcaaca
gaaaacatagcagaaactattgtcgctgatattcttaaaagttttgttcaatcttctggt
tcagaaacaactccacatacaaaagtaaactatcttgaaaagaaaaaacaggatgatgag
aaagaaacgactgagatcacagtgcagtctcaagttcaagaagaaatatcgatttctgat
gaagttgatctaggaagtctgttaaacaaggatggcaaagtggttctggaagatgctaag
ggaattccatccaaagatgtgatagaagatataataaatgttggcttgaaaggaagggac
agtataggcaaagtgtctgttaatgttgagattgttgaggagccattagaatttgcaact
gatgaaaggagtgaattttcaacaccatttgaagtagaggaagtagaggatacatcacct
ggtatggagcagcattatggcgatgagggggagcagaacatcacagctacagctgaagat
tttaaaaagaaaaaacaatccagtgagatcctcacccacgtggaagaagtaaccgaggca
gacgactcaattgatgaacaaaaatattttgtatctactccagatgattatggaaaagat
gacgactccgtgtatgggcaaattcacatagaagaagaatcgactattaaatattcttgg
caagatgaatttttgcggggcacacaaagaagaaaagatgatagcatgagctcaccagaa
caaacgtatcaggtggtgggagaggaagcaagtgcctatgttttaaacgaggaacatcca
aaaggtgaagcatcacatgcagaatccattgttattgaaaaagagattaaaataccacat
gaatttcaggcctcaataaaggggcttttattgaaggaaaccaaggaccctaaacaacag
ttgaaagaggcattggaacaactggaggggagtcttccagaaagcgtgaaagaggaacta
gctgcattaacgaaagaaaatcatgctgactccagtagcttggcagttgacatcaaaaaa
gttgagcaacctaacgaagatggtttggtgacaattgtggctgaagtcaatctgtcccag
acccttgacactgatcagtttgatattgcacagcttggtggcatcatcacaggtgagatt
gagaaggtgtctctgaagtccccaaaacaagagggctttgatgaacgtaacgacccagag
ttggaaagacagactgatggtaaaagcagcatagaaacaaacatttctccatcaagtaat
aaatccactccttgggctagccaaggggtttacagctcatccagtgtaagaagcacggat
ggcatggaatatcattccactgaacaagttattcgtgaaggtccggtttcagaagctgta
aaatttggtaatgtggaagaagtctctcagtcacaggtatcaactgatactaacaaatct
atcaggcatattaaaataggtccaacagaaattcggagaactgagcaggtcatatatgaa
gggcccatttctgaaactttggaacttggtggtaggggagaccttgttcagacaaaagga
tcattggatactggtagatctgtgaagctttttaaaatgggtcctaaggaaattcaaacc
acagaagaaatcatttataaagggcctgttactaaaactgtagcggtagatgaacctgaa
aatcttgctcagccacagttttcagctgatattaataggtccatgaggcatatcacatta
ggttcacagcaaattactgaagatatcattttcaaagggcccatttcagactctttagag
ctcagtagctcaggggatctttctcatacagaaggatcaacggataccaacagatcagta
aggcacattagattaagtccaaaagaaattcacacagaacaaataatatttgaagggccc
atttctggaaatgtggagctcagtggcacagaagatctttctcagacaggaagttcaata
aggcacattaaattaggacaaaaagagatgcattcagctgagaaaatcacatacgaaggg
cttctttctgaaaaagcagagcttggcaatatgggagacagctctcagatggagcatagg
tcagatactaatgcatctatcaggcatattaaattaggtcccaaagaatttatgacaact
gagcaaatcatctacaaggggcccatttctgaacatctggagttcagtgaatcaggagac
aattttcattcagaaggttcaataaagcacattacattaggtcaaaaggaaattaaaact
actgaacaagtcgtatatcaaggctccatttctgaatctccagagatcagtagtgcagga
ggaagtctttcagagagtgaaggaaactcagatatcaatagatccatcaggctcattaaa
gtgagtcccacagaaactcatacagagcaaatcatctttacaggacccatttctgaaaca
atgggtgatcattttcagacagaagggtcatcagagagcagccaatctataaggcatatt
aaattaggaccccaggaaacatcttttacttttcaaatggatgtaactaatgtggcggga
gtgcctgtggtggaagggagaacacaagcagctacagtcactgtatcaaataggaaggag
cctgatgtcagacagtcacaggttgtggttgaaagtgaccagaaggacactgaccgtgaa
agtaccaaagaagcaagtgtttttcttgatgcttcccaggctcatggtgaacaagtaaca
gagaagtcagcatttgaaaaaagtgtacaactgcaaagacttgtagaccaaaggtcagtg
atttctgatgaaaagaaaattgcccttgtgtatctagacaaagaagaagagggggaagaa
gataatgatggagactggttctga
DBGET
integrated database retrieval system
