Trachemys scripta elegans (red-eared slider): 117889386
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Entry
117889386 CDS
T07347
Symbol
SEC16A
Name
(RefSeq) protein transport protein Sec16A isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117889386 (SEC16A)
Membrane trafficking [BR:
tst04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
117889386 (SEC16A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec16_C
Sec16
Motif
Other DBs
NCBI-GeneID:
117889386
NCBI-ProteinID:
XP_034649367
LinkDB
All DBs
Position
17:19967296..20009164
Genome browser
AA seq
2484 aa
AA seq
DB search
MQPPPQTVPAGVGGPPPPAGIARNTYWRNSPFSRRANAPVSGATAPVQPVTDPFAFGRQT
PQGSLLGNPSKGNPLVMPGPAPSVFPRPAGVHCSQSYAGDNSHGLPTSLPTSVSQPEITS
NTFSSVVTPSSPAHIINSTAEMHQMHPNAEHNSSAQSLYNTGAAHESSLSGHPAMAHVAN
RPLSRQDVNRDPSNTSSVPTVAPFLPPPLQQTPPQWRPIHENLQPQVQNYWPYTEPPSPN
AVYSVSHSSAVMSHLPPQANLHQGHVHQHIPQNTGQAPLPIGGEKNEISSFPVANHHVNS
FQPENMFRQNIRMTNPWPSQPYQEQFYPQPLLPDSGFVNPITQENNPQKQSQNVSETPSG
HTSTNADSGTLSMFFKGDEAENEEILSSEKNDLSGKANYDACQVNSGHMYHQPLHPQQAA
ASVLSQPQISTSSANEAVQKGMDVQYFSKTISSQHETQTSKNSMYISDDKANVSKARENV
GSHYENVENLECIQNQEVLPSEPQNINRSSPSVGSDLYRYGSLPGQLPPKNTVVSHAERG
PNLEAPDSLPHPVRSDSVSSNYSNISHKSLSSSTRPQELVGTFIQQESGKPDEESSASFF
KQIDSSPLGGDSSEPNVSKNYHSNLSQPPTPSPPKPTGIFQTSANSSFEPVRSHGVGVKP
AEVDQAKMVVELRENHPNQKNTKKSTAMPAASPGNLEQPPDNLETIFMPQIHPLPLTVTG
EPGNMLQPASGPVVENIQSVPEKRPSTRAQGATKKCESPATTLWAHNELPNFGGNVLLAP
AAPAVYVPAKQTVEIIQPPEEGLSSQQPNKPECVPVQPSQHGNASSENLENPPKMGEEEA
LQSQASSGYASLLSSPPTESLQNHPILIAQPNQSYNLAQPINFSLSLCNQLTRNENHVSL
KDPGVEDKPVTGLQAPHAGGILSGENVPLSVMQVGSSVNTPPSSNLSHSNLLQSPVNSSE
ITSNQSTNLLMQPPSQTPINLAPEGKKNVNSEGCLPEFASKPGSNSAVSPGTNLPSGSAS
VLLVPPVNTMVPNNNSTNDSHSHEETSGALDFTVTRTLDKSKTSNPVQMHNPLLSCGPIF
PQQPVNHASQVGPDTHDKQHFYQQVTKDVQLQAPSDRATQGALLSQQQKQAAQMPQTVPS
GQSLVPSNYQMASGIKPTQAPQRQENQVPTNRYYPAGPPEGSSTQPPTSYSQTSPDKQPF
SGQSLSAPTSSASVTTSHPAMPTMQQDQNPPPSQTPQDACGPPQNPYYYYRHPYDAYQTP
YPQPYPPLDPRTAAHLYYQDDVYGQYGPRYQHYDRSNAAYVEPGGYRYGEPERPSSRASQ
CSDRPPSRQGYTEDYYNPKSGWNDYYADYYANPYNYGDPSRWERYPSAYDSRYRDPRSYD
QRYWYDTEQNLYQKREAYPYDNRQDRYEDHWRYDPRFAGSFDDETEPHRDPYGDEFDRRS
VHSEHSAHSLRSSHSVRSHQSSFSSRSQQSQVYRSNHDLTANAYETTTQPVSLHTDYPYG
GYPANFDGQQPFTDYGYSAETGWPPVEQVPSRPSTPEKFLVPHICARFGPGGHLTKVLPN
LPSEGQPALVEIHSMETMLQHMPEQEEMRAFPGPLAKDDTHKVDVINFAQNKATQCFQNE
NLIDKESASLLWDFIVLLCRQNGTVVGTDIAELLLRDHKTVWLPGKSPNEANLIDFTNEA
LEQVEEESGEAQLSFLTDSLITTIDSLERETERFRELLLYGRKKDALESAMKHGLWGHAL
LLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAM
VLSNLTNNMDVESRTITTMGDTLASKGLLDAAHFCYLMAQIGFGVYTKKTTKLVLIGSNH
SLPFLKFATNEAIQRTEAYEYAQSLGTQPCCLPNFQVFKFIYACRLAEMGLAAQAFHYCE
VISKTVLKNPYYYSPVLISQLIQISSQLRLFDPQIKEKPEQELFIEPSWLVRLRHLDGQI
KDGTIAYNADRSTPQQYACSTPSSELDHISQCDGTGTGQEMGPATENPLLASLLPNTVHP
MQGVQLMPSAPQTILEGSAAMTPPSQQETGGGVPFYPVAPPSIGPGSGFAPPGFPNQYGA
EQSSLYLGSAVPPGGPPPHAAEPRPEEQLNQETAMQRIPQESPIQKTFPEQREEDFYGKM
ATMAPGRRSRSTSQSSAHMGYGRRSRTTSESSTHSIGRERCNSAAKQPSPPPPSIPEGKE
TNKEIRKEPAARKSGANWLRWLMGKGKNEAHLPDDKNKSIVWDEKKQRWVNLDEPEEESK
PPPPPPAGFPKAPQTAPPGPGGPPGVNMFSRKAAGTRARYVDVLNPSGAKPSGAVPAPSD
LFAPLAPMPIPANLFVPNSVPEEQQPMEGSGAREQTLSANQVNTDATTEPQYLNSTMLPP
GSELPGSNPDGSQSGELSRSSSMSSLSREVSQHFNQPLRSVPPSGGPPAGTVQFYNPSQF
AQSPATTGSSRLGRIGQRKYPTLK
NT seq
7455 nt
NT seq
+upstream
nt +downstream
nt
atgcagccacctccacagaccgttccagcaggggttggtggaccgccgcctcctgcagga
attgctcggaacacgtattggcgaaacagcccatttagtagacgagcaaatgcaccagtc
tcaggagcaactgccccggtgcagcctgtgacagacccttttgcatttggcaggcaaact
ccacaaggttccctgttaggtaatccatccaaaggcaatcccctggttatgccaggtcct
gctccatcagtgtttcctcgtccagctggtgtgcattgttctcaatcatatgcaggagat
aattctcatggactgcctacatctttaccgacatctgtatctcaaccagaaataacttca
aatacattttctagtgtggtgactccttcatcaccagcacatattataaatagcactgca
gaaatgcatcaaatgcatccaaatgcagaacataactcttcagcacagtcgctttataat
acaggagcagcacatgaaagttctctcagtggacatccggctatggcgcatgtggcaaac
agacccctaagcagacaagatgttaatagggatccaagcaacactagttcagtgcctaca
gtagcaccattcctccctccacctcttcaacaaaccccacctcagtggagacccattcac
gaaaacctgcagcctcaagttcagaactactggccctacactgagccaccttctccgaat
gcagtttatagcgtttctcactcttcagctgttatgtcccatcttcctccccaagcaaat
ctgcatcaggggcatgtacatcaacatattccacaaaatactgggcaagcacctttgccc
attggtggtgaaaagaatgagataagcagcttcccagttgccaaccaccatgtgaacagc
tttcagcctgaaaatatgtttagacagaatataagaatgactaatccttggccaagtcaa
ccttaccaagaacagttttacccacagcctcttttaccagactctggttttgttaatccc
atcactcaagaaaataacccacaaaaacaatctcaaaatgtgtctgaaacaccaagtgga
catacatccacaaatgcagattcaggaactctctccatgtttttcaaaggggatgaggca
gaaaatgaagaaatactttcatcagaaaaaaatgatctgtccggtaaagctaactatgat
gcttgtcaggtaaattcagggcatatgtatcaccaaccactgcatcctcagcaggctgca
gctagtgttctctctcaaccacagattagcacaagctcagctaatgaggcagtgcaaaag
ggaatggatgtccaatatttttctaaaactataagcagccagcatgagactcagaccagt
aaaaactctatgtatattagtgatgacaaagcaaatgttagcaaagctcgtgagaatgtt
gggtcgcattatgaaaatgttgagaatctggaatgcattcagaatcaagaagttctgcca
agcgaaccacagaatattaatcgctcatccccaagtgtaggttctgatctgtacagatat
gggtcactgccagggcagttgcctccaaagaacaccgttgtgagccatgcggaaagagga
ccaaatctagaggcacccgattcgttacctcatcctgtccgatccgatagtgtatcctca
aactacagtaacataagccacaagagtctttctagttcaacaagacctcaagagcttgtt
ggtacatttattcagcaagaaagcgggaagcctgatgaggagtcctctgccagtttcttt
aagcagattgactcctctcctttgggaggagattcgagtgagccaaatgtcagcaagaat
taccatagtaatctgtcgcagcctccaactccaagtccccccaaacctacgggaatattt
cagacaagtgcaaatagttcttttgaaccagtaaggtcccatggggttggggtaaaacct
gcagaggttgaccaagcgaagatggtggttgaattaagagagaaccatccaaaccaaaag
aatactaagaaaagtacagctatgccagctgcctcaccaggtaatcttgaacagccgcca
gataacctggaaactattttcatgccccaaatacatccgttgcctcttacagtcactggt
gaacctggaaacatgttgcagcctgctagtggacctgttgtggaaaacatacaatcggta
cctgagaaaagaccctcaacaagagcacagggagcaactaaaaagtgtgagagtccagca
acaactctctgggctcacaatgagttacctaactttgggggcaatgttcttctagcccct
gctgctcctgcagtgtatgtacctgccaaacagacagtggaaattattcaaccgcctgaa
gaagggctgtctagtcagcagccaaataaaccagagtgtgttcctgtgcaaccatcccag
catggaaatgcatcttctgaaaaccttgagaatcctcccaaaatgggggaagaggaggca
cttcagtctcaggcaagttcaggttatgcaagtttgttgtcttctccacccacggagtct
ctgcaaaatcaccctatcttgattgcccagcctaatcaaagctataatttggctcagcca
attaatttttctctttctttatgtaatcagctaaccaggaatgaaaatcatgtttcactg
aaagatcctggagttgaagataaacctgtaacaggactccaagctccacatgctggtggg
atcctctctggggaaaatgtgccactgtctgtgatgcaggttggatcttcagttaataca
cctccatcttctaatctgtcacattctaatttattacaaagccctgttaattcttcagaa
atcacctcaaatcaatccacaaatttgttgatgcaacctccatctcagactccaattaat
ttggctccagaaggtaaaaagaatgttaattcagaaggttgtctgcctgaatttgctagt
aaaccaggatctaactcagctgtttctcctgggacaaatctccccagtggaagtgcaagt
gtgttgttagtcccaccagtgaataccatggtgcctaataataattctacaaatgactcc
catagtcatgaagaaacttctggagcactcgattttacagtaacacggacactggacaaa
agcaagaccagtaatcctgtacagatgcataatccattactttcttgtggtccaatattt
cctcagcaaccagtcaatcatgctagccaggtggggccagacacacatgacaaacaacat
ttctatcaacaggtaacaaaagatgtgcagcttcaggctccatcagacagagccacacag
ggggcattgctttctcagcaacaaaagcaagctgctcaaatgccacaaacagtaccttct
gggcagtccttggttccttcaaattatcagatggcttcaggaattaaacctacccaagca
ccacagcgacaagagaatcaggtgccaactaataggtattatccagcgggtcccccagag
ggtagttcaacacaaccaccaacaagctatagtcaaacaagtcctgataaacaaccattt
tctggtcagtcattgagtgctccaacttcatcagcatctgttaccaccagtcatccagcc
atgccaaccatgcaacaagaccagaatccaccaccttctcagactcctcaggatgcctgt
gggccaccacaaaacccctactactattacagacatccttatgatgcttatcagactcca
tatccacagccttaccctcccctggatcctagaacggcagctcatctctattaccaggat
gatgtctatggacaatatggtccccgctaccagcactatgatagaagcaatgctgcctat
gtggagcctggtggttatcgatatggtgagcctgagcgtcctagttccagagctagtcag
tgctctgatcgacctccttctagacaggggtataccgaagattattataatccgaaaagt
ggttggaatgattactatgcagactactatgcaaacccatataattatggagatccaagt
cgctgggaacgttatccatcagcatatgactccagatatagagatcccagaagttatgac
cagagatactggtatgacactgaacagaatctgtaccaaaagagagaggcatatccatat
gataacagacaggaccgatatgaagatcactggcgatatgatcctcgctttgctggaagc
ttcgatgatgaaactgagcctcacagagacccttatggtgatgaatttgacagacgaagt
gtccacagtgaacattctgcccatagcctccgtagttcccacagtgttcgtagccatcag
agcagcttcagttctcgctctcagcaaagccaggtttatagaagcaaccatgatctgaca
gctaatgcatatgaaaccaccacccagcccgtctcgcttcacacagattatccatacggc
ggataccctgctaactttgatggtcaacagccttttacagattatggctactcagctgaa
actggatggccacctgtagaacaagtcccatcaagaccctcgacacctgagaaattttta
gtgcctcatatctgtgcaaggtttggacctgggggccatctgacaaaagtgttgccaaac
ctgccttcagaaggacagccagctttggttgagatacacagtatggagactatgttgcaa
catatgccagaacaagaagagatgagagcctttccgggccctcttgctaaagatgatacc
cataaagtggatgtcattaattttgcacaaaacaaagccacacagtgctttcagaatgaa
aatctaattgacaaagagtctgcaagcctgctttgggattttattgtattgttgtgcaga
cagaatgggaccgtagtgggcacagacattgcagagcttttgctacgagatcacaaaaca
gtttggcttcctgggaaatcgcccaatgaagcaaacttgattgacttcactaatgaggct
ttggagcaagtggaagaagagtctggtgaagctcaactctcatttctcaccgatagtctt
ataaccacaattgacagtcttgaaagagagacggagagattcagggagcttctgctttat
ggtcgtaagaaggatgctttggagtctgccatgaagcatggattatggggtcatgctctg
ctgcttgccagtaaaatggacagcagaacacacgcaagagtcatgaccagatttgccaac
agtcttccaattaatgatcctctgcaaactgtttaccagctcatgtctggaagaatgcca
gcagcatccacatgctgtggagatgagaaatggggagactggaggcctcatcttgcgatg
gtactatccaacttgaccaataacatggatgtggaatcgaggactattaccaccatggga
gatactcttgcttctaaaggccttttagatgctgctcatttttgctacttgatggcccag
atcgggtttggcgtttatacaaagaaaacaacaaagcttgtcctaattggatcaaatcac
agcttgccatttttaaagtttgccaccaatgaagccattcaaagaacagaagcctatgaa
tatgcacagtcactgggaacccagccctgctgtttacccaatttccaggttttcaaattc
atctatgcttgccgactagctgagatgggacttgctgcacaagcgtttcattactgtgaa
gtgatttccaaaactgttcttaaaaatccctactattattcgcctgtgcttatcagtcaa
cttattcagatatcatctcagttgcgcctgttcgacccacagattaaagagaaaccagag
caggaattatttattgaaccttcatggttagtacgacttcggcacttggatggacagatc
aaggatggtacgatagcttacaatgcagatagatccacccctcagcagtatgcctgtagc
acaccaagctctgaattagaccatatcagtcaatgtgatggaacaggaactgggcaggaa
atgggacctgctactgaaaacccattgttggcatccttgttacctaatacggtgcacccc
atgcaaggtgtgcagctaatgccttcagcccctcagactatccttgagggatcagcagct
atgactcctccttctcagcaagaaactggtggtggtgttcctttctatcctgtggctcct
ccctctattgggccagggtctggctttgcaccaccaggctttccaaatcaatatggagct
gaacagtcttcactgtacctgggatctgcagtgccaccgggaggaccacctcctcacgca
gcagaaccacggccagaagagcagttaaaccaggaaacagcaatgcagagaattccccag
gaatctccaattcaaaagactttccctgaacaaagagaggaggatttctatggcaaaatg
gcaactatggcaccgggacgaagatccagatccacctctcagtcttcagcacacatgggc
tatgggcgaagatctcggaccacctcagaatcctccacccattctataggacgagaaaga
tgcaactctgcagcaaagcagccctctcctcctcctccatccattcctgaagggaaagag
accaacaaagagatcaggaaggagccagcagcgagaaagagtggtgcaaattggcttcgc
tggctgatgggaaaaggaaagaatgaagctcaccttccagatgataagaacaaatcaatt
gtttgggatgaaaagaaacagcgctgggttaatttagacgagccagaagaggagagcaaa
ccaccgccaccaccaccagccgggtttcctaaagctcctcagactgctccacctgggccc
gggggtccacccggtgtcaacatgttttccagaaaagcagcaggaaccagagctcgttac
gttgacgttctaaacccaagtggagcgaaacccagtggtgctgtccctgccccatcagac
ctgtttgcccccttggcaccaatgcctatccctgcaaacttgtttgttccaaactcagtt
cctgaggagcagcaacctatggaggggagcggggcacgagaacagacattatctgcaaat
caagtcaacactgatgctactacagaaccacagtatttaaactctacaatgcttccacct
ggttctgaactccctgggtccaatccagatggctcccagtcaggagagctttcgcgctct
agttcaatgagttcattatcacgtgaagtaagccagcattttaatcagcctctccgtagt
gtgccaccttctgggggaccgccagcaggaactgttcagttctacaacccttctcaattt
gcacaatctcctgcaactactggaagttcaaggctggggagaattggacagagaaaatac
ccaacattgaaatag
DBGET
integrated database retrieval system
