Thermoanaerobacterium thermosaccharolyticum DSM 571: Tthe_2539
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Entry
Tthe_2539 CDS
T01299
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ttm
Thermoanaerobacterium thermosaccharolyticum DSM 571
Pathway
ttm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tthe_2539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttm03021
]
Tthe_2539
03019 Messenger RNA biogenesis [BR:
ttm03019
]
Tthe_2539
Transcription machinery [BR:
ttm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Tthe_2539
Messenger RNA biogenesis [BR:
ttm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Tthe_2539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
Spore_III_AA
AAA
NACHT
AAA_25
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ADL69995
UniProt:
D9TLQ5
LinkDB
All DBs
Position
complement(2555520..2557442)
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AA seq
640 aa
AA seq
DB search
MDFNDLEGKSLAELREIAKRYGIKSITKYRKQELKELIVEKSKQIELDEKIDKENEAKDL
HLDETSDEKHQDEKDESSNLEVADKKIEPEVSDNESDENIEENVMSGTEAKSDNTSEEES
KDAPEDTNEANEKSDLEEKKEEKKTLGKISIPVEELEKSDADYEELRRKLRMRLRSKENI
TETVQEAKKDIDEALKVKHENEAVEDEENVAEDLGGEDVQEEKEALDKEKGVEDKEKETK
KGHSIFIKEGLPLISDVSEPLKELIETQGDVVAEGVLDIMPDGYGFLRVENFIQGNKDIY
ISQSQIRRFGLKVGDKVKGITRIPREGEKYSAILYVESINGESPDLAKKRIPFDELTPIF
PDEKLKLETIPTELAMRLVDIIAPIGKGQRGMIVAPPKAGKTTLLKKIANSISINHPEVH
LIVLLIDERPEEVTDMKRSIKGEVVYSTFDELPEHHTKVAEMVLEYAKRLVEYGKDVVIL
MDSITRLARAYNLVTPPSGRTLSGGLDPSALHPPKRFFGAARNIEEGGSLTILATALIET
GSRMDDVIFEEFKGTGNMELHLDRKLQERRIFPAIDIYKSGTRKEELLLSQKELEAMWMI
RKAMSSIAPNEVTEVLIDRLMRTRTNAEFIEAIRSQLYKS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
ttggattttaatgatttagaagggaaatcccttgcagagcttagggaaatagcaaaaaga
tacgggattaaaagcattactaagtacagaaagcaggagttaaaggagctcatagtagaa
aagtcaaaacagattgagcttgacgaaaaaattgataaagaaaatgaagccaaagattta
catttagatgaaacgtctgatgaaaaacatcaagacgagaaagacgaatcatcaaattta
gaagttgctgacaaaaaaattgagccagaagtatcagataatgaaagtgatgaaaatatt
gaagaaaatgtgatgagtggtactgaggcgaaaagtgataatacctcagaagaagaaagc
aaagacgctccagaagatacaaatgaagcgaatgaaaaaagtgatttagaagaaaaaaaa
gaagagaaaaaaactctagggaagattagcatacctgttgaagaactggaaaagtcggat
gcagattatgaagagcttagaagaaagctaaggatgcgtcttagaagtaaagaaaatatt
acagaaactgttcaggaagcgaaaaaggacattgatgaggctttaaaagttaagcatgaa
aatgaagccgttgaagatgaagaaaatgtggctgaagatttaggaggagaagacgtacaa
gaggaaaaagaggctctagataaagaaaaaggggttgaagataaagaaaaagagacaaag
aaaggccacagcatatttattaaagaaggccttcctcttataagcgatgtatctgagcct
ttaaaagaactcatagagacacagggagacgtcgtcgcagaaggcgtacttgatataatg
cctgatggatatggatttttaagagttgaaaattttatacagggcaataaagatatttat
atatcacaatcacagattaggcgttttgggcttaaagtcggtgataaagtaaaaggaatt
acaaggattccaagagaaggggaaaaatattctgcaattctatatgtggagtcgataaat
ggcgagagtccagatcttgcaaagaagaggattccgttcgacgagcttacacctattttc
ccggacgaaaaattaaaacttgaaacgattccaacagaacttgccatgaggcttgtggat
attattgcgcctatcggcaaaggccaaagaggaatgatagtggctccgccaaaggccgga
aagacaaccttattaaagaaaatagccaatagcatatctataaatcatcccgaagttcac
ttgatcgttcttctgattgatgaaagaccagaagaagttacagatatgaaaaggtcaatt
aaaggcgaagttgtttactctacttttgatgaacttccagagcatcatacaaaagtggct
gagatggtattggaatatgcaaaaagacttgtagaatacggtaaagatgttgtgattctt
atggacagtataacaaggcttgcaagagcttataacctggttacaccaccatctggcagg
actttatctggtggccttgatccatcagcacttcatccacctaagagattttttggcgct
gcaagaaatatagaagaaggtgggagcttgactattcttgcaactgcacttattgaaaca
ggaagccgcatggatgatgtcatatttgaagagtttaaagggacaggtaatatggagctt
catcttgatagaaaattacaggaaaggcgtatattccctgcaattgatatatacaaatcc
ggtacaagaaaagaagagctgctactttcacagaaagagctggaagctatgtggatgatt
agaaaggcaatgagcagcatagcacctaatgaagtgactgaagtattaatcgatagactt
atgaggacaaggacaaatgctgagtttatagaggccataagatctcaactttataaatct
tga
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