Tupaia chinensis (Chinese tree shrew): 102470303 Help Entry 102470303         CDS       T02978                                  Symbol COL2A1 Name (RefSeq) collagen type II alpha 1 chain   KO K19719   collagen type II alpha Organism tup  Tupaia chinensis (Chinese tree shrew) Pathway tup04151   PI3K-Akt signaling pathway tup04510   Focal adhesion tup04512   ECM-receptor interaction tup04974   Protein digestion and absorption tup05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:tup00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     102470303 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102470303 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102470303 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     102470303 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     102470303 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tup00536]     102470303 (COL2A1) Glycosaminoglycan binding proteins [BR:tup00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102470303 (COL2A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  102470303 NCBI-ProteinID:  XP_006168649 LinkDB All DBs Position Un AA seq 1490 aa AA seqDB search MIRLGAPQTLVLLTLLVAAVLQCQSQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTG TVLCDDIFCEEMKDCLSPEIPFGECCPICPTDLATASGKPGPKGQKGEPGDIKDIVGPKG PPGPQGPAGEQGPRGDRGDKGEKGVPGPRGRDGEPGTPGNPGPPGPPGPPGPPGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG PMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPG AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGEPGPAG PQGAPGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG QPGVMGFPGPKGASGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG ARGLPGTPGTDGPKGAAGPTGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG PPGADGQPGAKGEQGEAGQKGDAGVPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGVRGDSGPPGRAGDPGLQGPAGPPGDKG EPGEDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG PPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPG PAGPTGKQGDRGESGAQGPMGPAGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTG LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDVEVDA TLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPXFPAGDYWIDPNQGCTLDAMKVFCNM ETGETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTF LRLLSTEGAQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDG CTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgatccgcctcggggctccccagacgctggtgctgctgaccctgctcgtcgccgcagtc cttcagtgtcagagccaggatgtccaggaggctggcagctgtgtgcaggatgggcagagg tataatgataaggatgtgtggaagcctgagccctgccggatctgtgtctgtgacactggg actgtcctctgcgacgacatattctgtgaagaaatgaaagactgcctcagccctgagatc cccttcggagagtgctgtcccatctgcccaactgacctcgccactgccagtggcaaacca ggaccaaagggacagaagggagaacctggagacatcaaagatattgtaggacccaaagga cctccggggcctcaggggcctgcaggcgaacaaggacccagaggtgatcgtggtgacaaa ggtgaaaaaggtgttcctggacctcgtggcagagatggagagcctgggacccctggaaat cctggcccccctggccctcctggccctcctggccctcctggcccccctggccttggtgga aactttgctgcccagatggctggaggatttgatgagaaagctggtggtgcccagatggga gtaatgcaaggaccaatgggccccatgggacctcgaggacctccaggccctgctggtgct cccggaccccaaggatttcaaggcaatcctggtgaacctggcgaacctggagtctctggt cccatgggtccccgcggtcctcctggccctcctggaaaacctggtgatgatggtgaagct ggaaaacctggaaaatctggcgaaagaggcccccctggccctcagggtgctcgtggcttc ccaggaaccccaggccttcctggtgtcaaaggtcacagaggttatccaggcctggatggt gctaagggagaagcaggtgccccaggtgtgaagggtgagagtggctctcctggtgagaat ggttctccgggtccgatgggtccccgtggcctgcctggtgagagaggacggactggccct gctggtgctgcgggtgctcggggcaacgacggtcaaccaggccccgcagggccaccgggt cctgtcggtcctgctggtggtcctggctttcctggagctcccggtgctaagggtgaagct ggccccaccggcgcccgtggtcctgaaggtgctcaaggtcctcgaggcgaacctggcact cctgggtcccctgggcctgctggtgcctctggtaaccctggaacggatggaattcctgga gccaaagggtctgctggtgctcctggcattgctggtgctcctggcttccctggaccccgt ggccctcctggccctcaaggtgcaactggtcctctgggcccgaaaggccaggcgggtgaa cctggtattgctggcttcaaaggtgaacaaggccccaagggagagcctggtcctgctggc ccccagggagcccctggtcctgctggcgaagaaggcaaaagaggagctcggggagagcct ggtggtgctgggcctattggtccccctggagaaagaggtgctcctggcaaccgtggtttc ccaggtcaagatggtctggcaggtcccaagggcgcccctggagaacgagggcccagtggc cttgctggtcccaagggagccaatggtgaccctggccgtcctggagaacctggccttcct ggagcccggggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggccct tctggtgcccctggtgaagatggtcgccctggacctccaggtcctcagggggctcgtggg cagcctggtgtcatgggtttcccaggccccaaaggcgccagtggcgagcctggcaaagct ggtgagaagggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggcgag acaggtgctgcaggaccccccggccctgccggacctgctggagaacgaggcgaacagggt gctcccgggccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggt ggaaaaccaggtgatcagggtgttcctggtgaagctggagcccctggcctcgtgggtcct aggggtgaacgaggcttcccaggtgaacgtggctcaccaggtgcccagggcctccagggt gcccgtggcctccctggcactcccggcactgatggtcccaaaggtgcagctggcccaacc ggcccccccggggctcagggtcctccaggtcttcagggaatgcccggggagaggggagct gctggtatcgccgggcccaagggagacaggggtgatgttggtgagaaaggccctgaggga gcccctggaaaggatggcggaagaggtctgactggccccattggtccccctggccctgct ggtgccaatggtgagaagggagaagtcggacctcctggtcctgcaggaagtgctggtgct cgcggtgccccgggtgaacgtggggagactgggccccccggacctgcaggcttcgctgga cctcctggtgctgatggccagcctggtgccaagggtgagcaaggggaggccggccagaaa ggcgatgcaggtgtcccaggccctcagggcccctctggagctcctgggccccagggtcct actggagtgactggtcctaaaggagcccgaggtgcccaaggccccccgggagccactgga ttccctggagctgctggccgcgttggacccccaggctccaatggcaaccctggacccccg ggtcctcctggtccttctggaaaagatggtcctaaaggtgttcgtggagacagcggcccc cctggccgtgctggtgaccctggcctccaaggtcctgctggtcccccaggcgataaggga gagcccggagaggatggtccctctggtgccgatggtcctccaggtccccagggtctggct ggtcagagaggcatcgttggtctgcctgggcaacgtggtgagagaggcttccctggcctg cctggcccgtcgggcgagcctggcaagcaaggagctcctggtgcatctggagaccgaggt ccccctggccccgtgggtcctcctggtctgactggtcctgcaggtgaacctggacgagag ggaagccctggtgctgacggtcctcctggcagagatggtgcggctggagtcaagggtgac cgtggtgagactggtgctgtgggtgctcctggagcccctgggccccctggctctcctggc cccgccggcccaactggaaagcagggcgacagaggagaatctggtgcacaaggccccatg ggacctgcaggaccagccggagcccgaggaatccctggccctcaaggtcctcgaggtgac aaaggagaatctggagaacctggcgagagaggactgaagggccaccgtggcttcactggt ctgcagggtctgcccggccctcctggtccttctggagaccaaggtgcttctggtcctgct ggtccttctggccctcgaggtcctcctggccctgttggtccctctggcaaagatggcgct aatggaatccctggccccatcggccctcctggtccccgtggacgttcaggagaaactggc cctgctggtcctcctggaaatcctggccctcctggtcctccaggaccccctggccctggc atcgacatgtcagcctttgctggcctaggccagagagagaagggccccgaccctctgcag tacatgcgggccgaccaggcagctggcaatctgagacagcatgacgtcgaggtggatgcc acactcaagtccctaaacaaccagatcgagagcattcgcagccccgagggctcccgcaag aaccctgctcgcacctgccgggacctgaaactctgccacccnnnnttccctgcaggagac tactggatcgatcccaaccaaggctgcaccttggacgccatgaaggtcttctgcaacatg gagactggcgagacctgtgtctaccccaacccagcaaatgtccccaagaagaactggtgg agcagcaagagcaaggacaagaaacacatctggtttggagaaaccatcaatggtggcttc catttcagctatggcgatgacaacctggctcccaacactgccaacgtccagatgaccttc ctacgcctgctgtccactgagggtgcccagaacatcacctaccactgcaagaacagcatt gcctacctggacgaagcagctggcaacctcaagaaagccctgctcatccagggctccaat gacgtggagatccgggctgagggcaacagcaggttcacatatactgtcctgaaggatggc tgcacgaaacacaccggtaagtggggcaagactgtcattgagtaccggtcacagaagacc tcacgcctccccatcattgacattgcacccatggacataggaggacctgagcaggaattt ggtgtggacatagggcctgtctgcttcttgtaa

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