Tupaia chinensis (Chinese tree shrew): 102474595 Help Entry 102474595         CDS       T02978                                  Symbol LIG1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism tup  Tupaia chinensis (Chinese tree shrew) Pathway tup03030   DNA replication tup03410   Base excision repair tup03420   Nucleotide excision repair tup03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tup00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     102474595 (LIG1)    03410 Base excision repair     102474595 (LIG1)    03420 Nucleotide excision repair     102474595 (LIG1)    03430 Mismatch repair     102474595 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tup03032]     102474595 (LIG1)    03400 DNA repair and recombination proteins [BR:tup03400]     102474595 (LIG1) Enzymes [BR:tup01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      102474595 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      102474595 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      102474595 (LIG1) DNA replication proteins [BR:tup03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     102474595 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      102474595 (LIG1) DNA repair and recombination proteins [BR:tup03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      102474595 (LIG1)    NER (nucleotide excision repair)     Other NER factors      102474595 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      102474595 (LIG1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR Motif Other DBs NCBI-GeneID:  102474595 NCBI-ProteinID:  XP_006142255 LinkDB All DBs Position Un AA seq 930 aa AA seqDB search MQRSIMSFFHPKKEGKAKKPEKETSSQSREVDSSSKVALKERNGVVPDGDSPVKRPGRKA ARVLGSEGEEEDEVLTPTKGQKPALDSPQASPSSPATSPENSPSLSDTSPTDISPSGIPK RRTARKQIPKRTIQDVLEEQSEDKARETKRKKEEEEAETPRESLTETQVTKKKEAEEGDQ PTTPTMTLKTSTETPAESISEPGVTVKQEAQDEDKTKPPPQASKTLSSFFTPRKPAVKKE VKEEESGKPSVKKEVKEEGSGVPKNEETTDPLDPACYNPAKNNYHPIEDACWKPGQKVPY LAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPLDLLPVLYLSLNRLAPLQQGLELGV GDAVLIKAVAQATGRQLESVRAEVAEKGDLGLVAENSRSTQRLMLPPPPLTTSGVLAKFR DIARLSGGTSMARKVDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSL TPPGQEFPPAVVDAGKGKTAEARKTWLEKQGMILKQTFCEVPDLDRIVPVLLEHGLERLP EHCRLSPGVALKPMLASPTRGISQVLKRFEEAAFTCEYKYDGQRAQIHMLEGGEVKIFSR NQEDNTGKYPDIISRIPKIKLSSVTSFILDTEAVAWDQEKKQILPFQVLTTRKRKEVDAS EIQVQVCVYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIDE FLEQSVKDSCEGLMVKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRG KRAGQYGGFLLASYDADTEELQAICKLGTGFCDRELEEQHENLQDLVLPTPRSYVRVGGA AAPDHWLEPRIVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVRYDKRLEEATT SAEVASLYLKQSQIQNQQSSDSDSDFDFLC NT seq 2793 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtatcatgtcattttttcaccccaagaaagagggtaaagcaaagaagcct gagaaggagacatccagccaaagcagagaggtggactcatcctcaaaggtggcgctgaag gagcggaatggagtggtgcccgatggtgactctccagtgaagagaccaggaaggaaggca gcccgggtcctgggcagtgaaggggaggaggaggatgaagtcctcacccccaccaagggc cagaagcctgctctggatagcccacaagcatccccttccagtcctgccacatctcctgaa aacagcccttccctctctgacacctctcccacggacatctccccatcagggatcccaaag cgtcgcacagctcggaagcagattccaaaacggacaattcaggatgtcctagaagagcag agtgaggacaaggcccgagaaaccaagaggaagaaggaggaggaagaagcagagacccca agagaaagcctcacagaaactcaagtgacaaagaagaaggaagcagaagagggggaccaa cccacgacacccaccatgaccctaaaaacctctacagaaaccccagcagaaagcatttca gagcctggggttactgtgaagcaggaagcacaggatgaggacaagactaaacctcccccg caagcctccaagacgctcagcagtttcttcactcctcggaagccagcagtcaagaaggaa gtgaaagaagaggagtcgggcaagccatcagtcaagaaggaagtgaaggaagaggggtcg ggcgttccaaaaaatgaggagaccacagaccccctggatccagcctgctacaatcctgcc aaaaacaactaccatcccattgaagatgcctgctggaaacctggccagaaggtcccatat ttggctgtggcccggacgtttgagaaaatcgaggaggtttctgcccggctccggatggtg gagacgctgagcaacttgttgcggtccgtggtggccctgtcacccctagacctcctccct gtcctctacctcagtctcaaccgcctcgcaccactccagcaaggcctggagctcggtgtg ggtgatgctgtcctcatcaaggcagtggctcaggccacaggtcgccagctggagtccgtc cgagccgaggtggccgagaagggtgacttggggctggtggctgagaacagccgcagcact cagagactcatgctgcctccaccaccgctcaccacctctggggtccttgccaaattccgt gacattgcccggctctccggtggcacttctatggccagaaaggtggacatcatcaaaggc ctctttgttgcctgccgccactcagaagcccgattcattgccaggtccctgagtggacga cttcgccttggactggcagagcagtcagtgctggctgccctcgctcaggctgtgagcctc acacccccaggccaagaatttcctcctgctgtggtggatgctgggaagggcaagacagca gaggccagaaagacgtggctggagaagcaaggcatgatcttgaagcagacattctgcgag gtgcctgacctggaccgaattgtccccgtgctgctggagcatggcctggagcgtctcccg gagcactgcaggctgagcccaggggtcgccctgaaaccaatgttggccagtcccacgcgg ggcatcagccaggtcctgaaacgcttcgaggaggcagctttcacttgcgagtacaaatat gatgggcagagggcacagatccacatgctggaaggcggcgaggtgaagatcttcagcaga aatcaagaagataacaccgggaagtaccctgacatcatcagccgcatccccaagattaag ctctcgtcggtcacatcttttatcctggacactgaagctgtggcttgggaccaggaaaag aagcagatcctgccattccaagtgctcaccacccgcaaacgcaaggaggtggacgcttcg gagatccaggtgcaagtgtgtgtgtacgccttcgatctcatctacctcaacggagagtcc ctggtacgtgagcccctttcccgacgccggcagctgctccgggagaactttgtggagaca gagggtgagtttgtcttcgctacctccctggacaccaaggataccgaacagatcgacgag ttcttggaacagtcagtcaaagactcctgcgaggggctgatggtgaaaaccttggatgtc aatgccacctacgagatcgctaagagatcacacaactggctcaagctgaagaaggactac ctcgatggcgtgggtgatacactggacctcgtggtgatcggtgcctaccttggccgggga aagcgagctggccagtatgggggcttcctgctggcctcctacgatgcagacactgaggag ctacaggccatatgcaagctcggaactggcttctgcgatcgcgagctggaggaacagcac gagaacctccaggacctggtgctgcccaccccacgctcctacgtgcgggtaggtggtgcc gccgcccccgaccactggctggagcccagaattgtgtgggaggtgaagtgtgccgacctc tccctgtcccccatctaccctgctgcccggggcctggtggatagtgagaaagggatctct cttcgcttccctcggtttatacgagtccgttacgataaaaggctggaggaggccaccacc agtgccgaggtggcctctctgtacctgaagcagagtcagatccagaaccagcagagctca gactcagactctgacttcgattttctctgctaa

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