Tupaia chinensis (Chinese tree shrew): 102482209
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Entry
102482209 CDS
T02978
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specific factor 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03015
mRNA surveillance pathway
tup03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102482209 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102482209 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tup03019
]
102482209 (CPSF6)
Messenger RNA biogenesis [BR:
tup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
102482209 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
102482209
NCBI-ProteinID:
XP_014442858
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All DBs
Position
Un
AA seq
582 aa
AA seq
DB search
MLFGPFSSIISVSQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGK
GAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF
ALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKA
GPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLF
LETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNR
GDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPS
PLGPPLTLAPPPHLPEPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPP
YDRGDYGPPGRELDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRH
KSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgctctttgggcctttttctagcattatttctgtatctcaggaagctgaatatggtggg
catgatcaaatagatttgtatgatgatgtcatctctccatctgcaaataatggagatgcc
ccagaagaccgtgattacatggatactcttccaccaactgttggtgatgatgtgggtaaa
ggagcagcaccaaatgttgtctatacatatactggaaagagaattgcattatatattgga
aatctaacatggtggacaacagatgaagacttaactgaagcagttcattctttgggagtg
aatgatattttggagataaaattttttgagaatcgggcaaatggccagtcaaaggggttt
gcacttgttggtgttggatctgaagcatcttcaaaaaagttaatggatcttttgcctaaa
agagaacttcatggtcagaatcctgttgtaactccatgcaataaacagttcctgagtcag
tttgaaatgcaatccaggaaaactacacagtcaggacaaatgtctggggaaggtaaagct
ggtcctccaggaggcagttcacgtgcagcatttccacaaggtggtagaggacggggccgt
tttccaggggctgttcctggtggggacagatttcctgggccagcaggaccaggagggcca
cccccaccttttccaggaaatttgatcaagcatcttgttaaaggaactcggcctttgttc
ctggaaactaggattccatggcatatggggcacagcatagaggaaatacccatttttggc
ctaaaagctggacagactccaccacgtccacccttaggtcctccaggcccacctggtcca
ccaggtcctccacctcctggtcaggttctgcctcctcctctagctgggcctcctaatcga
ggagatcgccctccaccgccagttctttttcctggacaaccttttgggcagcctccattg
ggtccgcttcctcctggtcctccacctccagttccaggctatggcccccctcctggtcca
ccacctccacaacagggaccacctccacctccaggtccctttccacctcgcccaccaagt
ccacttgggccaccccttacacttgctcctcctccgcatcttcctgaaccaccaccaggt
gccccgccgccagctccacatgtgaacccagctttctttcctccaccaactaacagtggc
atgcctacatcagatagccgaggtccacccccaacggacccatatggccgacctccacct
tatgataggggcgactatgggccccctggaagggaactggatactgcaagaacaccgttg
agtgaagccgagtttgaagaaatcatgaatagaaatagagcaatctcaagcagtgctatt
tcaagagctgtgtctgatgctagtgctggtgattatgggagtgctattgagactttggta
actgcgatttctttaattaaacaatccaaagtgtccgctgatgatcgttgcaaagttctc
attagctctttgcaagattgccttcatgggattgagtctaagtcatatggttctggatca
agacgtgaacgatcaagagagagggaccatagtagatcgcgagaaaagagtcggcgccat
aaatcccgtagtagagatcgtcatgatgattattatagagagagaagcagagaacgagag
agacaccgggatcgggaccgagatcgggaccgagaacgtgatagagagcgcgagtatcgt
catcgttag
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