Trichomonas vaginalis: TVAG_2v0546320
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Entry
TVAG_2v0546320 CDS
T01022
Name
(RefSeq) ATP-dependent RNA helicase family
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TVAG_2v0546320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tva03041
]
TVAG_2v0546320
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TVAG_2v0546320
Spliceosome [BR:
tva03041
]
Complex C
Other components
Step II factors
TVAG_2v0546320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
ATPase
AAA_16
SRP54
AAA_30
T2SSE
Sigma54_activat
ABC_tran
PhoH
NACHT
AAA_23
TsaE
Motif
Other DBs
NCBI-GeneID:
4763780
NCBI-ProteinID:
XP_001318132
UniProt:
A2EN72
LinkDB
All DBs
Position
II:complement(14832343..14835015)
Genome browser
AA seq
890 aa
AA seq
DB search
MTDEGDLEDAFHIDDFGDEVVTEAKIEEKKAAVVETPKERINMAPSQNAQRDLDNNKWEE
DLISQSGVNKSLFVRKIDDDETENKICIQVNAEKPEFLTNQNTSRVYKPFVDKRYNLEGE
IYQLAKAGSQSVAEWRKRKEKEQLATDLTKSVNLEKISKGKEIIEAETAGDSQFINHLKD
TGKINRAKLPIMDFREKILKVISENSVVIIVGETGSGKTTQLTQFFYEDGYGKFGQIVCT
QPRRVAACSIAKRVADEMGVELGGLVGYAIRFEEALSDKTIIKYMTDGILLRESLNEDDL
YKYSVIIMDEAHERALNTDVLFGVLKKILSRRSDLKVIVTSATMDASKFSKYFGGAPIFH
IQGRTYDVEPFFLRSNPQDYVYEAVRQACSIHLKESPGDILIFMTGQDDVECTCQLIREH
LAKIENAPEMAVFPIYSQLPVEQQAKVFENLKIRKCVVATNIAETSLTIDGIRYVIDSGF
CKQKSYSSKAGLDTLLVQPISQAAATQRMGRAGRTSEGKCWRLFTETSFKYEMLPMTIPE
VQRTNLANVILLLKSLGFDDVLSFDFMDPPPLDNFLHAMNQLWSLRALDNEGKLTKLGKD
MVQFPLDPTLSKMLLVGNKFGCLEEILTIVSMLSVSEIFYKPHGREEEADAMRMKFLVPE
SDHLTMLNVFNLWFNAGLNRPTKKEQEQERAIFAKRHFLHNVTLCKALDIRQQLEDIALQ
GGMKMSHCGLENWDIVRKVICSSYFHHAAHLKNLSTYYNIQTGVECIVHPTSSLAGLSYI
PEYIVYHELVLTKRHYLHGVTAIDPLWLSQMAPEFFTATDLYGNPLEEGKPKPEDLDDFS
QSQMKSEVKNEVQKEVKEIQPNQIKPQVVPIPFDKPLELPSSARPKRRKL
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgaaggagatttagaagatgcatttcatattgatgattttggtgacgaagta
gtaactgaggctaaaattgaggaaaagaaagctgcagttgtcgaaactcctaaagaaaga
ataaatatggctccatctcagaatgcacaaagggatcttgataataacaaatgggaagaa
gatttaatttctcagtctggtgtcaataaatctctttttgttcgaaaaatcgatgatgat
gaaacagaaaataaaatttgcattcaagtcaatgctgaaaaaccagaattcttaacaaat
caaaatacaagccgagtttacaagccatttgttgataaacgttataacttagaaggagaa
atttatcaattagcaaaagcaggcagtcaaagcgtcgctgaatggcgaaaaaggaaagaa
aaggaacagttagctacagatcttactaagtcagttaatttagaaaagatttcaaaagga
aaagaaataattgaagcagaaacggcaggagactcccaatttatcaatcacctaaaggat
acaggcaaaataaaccgcgcaaaattaccaattatggattttcgagaaaaaattttgaaa
gttatttcagaaaacagcgtcgttatcattgtcggtgaaacaggttccggtaagactaca
caactaactcaatttttctacgaagatggctatggaaaatttggccaaattgtttgtact
caaccacgtagagttgctgcatgttctatagcaaaaagagttgcagatgagatgggtgta
gagcttggtggccttgttggctacgcaattcgttttgaagaagctttaagtgacaaaaca
attatcaaatatatgacagatggtattctattgagagaatcgcttaacgaagatgattta
tacaagtattccgttataattatggatgaagctcacgaaagagccttaaatacagatgtt
ttgttcggagttctcaaaaaaatcctttccaggcgttcagatcttaaagttatagttaca
tcagctacaatggatgcctcaaaattctcaaaatactttggaggagctccaatttttcat
attcaaggaagaacatacgacgtagagccatttttccttcgttccaaccctcaagactat
gtatatgaagcagtccgccaagcctgcagcatacatcttaaagaatcacccggagatatt
ttaattttcatgacaggccaagatgacgttgaatgtacctgccaattaatcagagaacat
cttgcaaagatcgaaaatgctccagaaatggctgtattccctatttattcccaacttcct
gtcgaacaacaagcaaaagtgttcgaaaacctgaaaataaggaaatgtgttgtagccaca
aacattgcagaaacaagtctgaccatcgatggaataagatatgtcatagattccggtttt
tgcaaacaaaaaagttattcttcgaaagcaggactggatactttacttgtacagcctatt
tcgcaagccgccgccacccaaagaatgggtagagcaggtagaacaagcgaaggaaagtgc
tggaggctgtttactgaaacttcatttaaatatgagatgctaccgatgacgattcctgaa
gttcagaggacaaatttggcaaatgtaattttattgctaaagtctctcggcttcgatgat
gttttatcctttgatttcatggatccgcctccattagataactttttacacgcaatgaac
caattatggagtcttagagccctggataatgaaggtaagctcacgaaacttggtaaggat
atggtccagttcccattggatcctacactttcaaaaatgctgctcgtaggtaacaaattt
ggctgcctcgaggagatattaaccattgtttcgatgctatcagtcagtgagatcttctac
aagccacacggaagggaagaagaagcagatgcaatgagaatgaaatttttagtgccagag
agcgaccacctgaccatgcttaatgtttttaacctttggttcaacgcagggcttaacaga
ccaaccaaaaaagagcaagaacaagaaagagcaatatttgcaaaacgccatttccttcat
aatgttacattatgcaaagctcttgacatcaggcaacagctagaagacattgcccttcaa
ggaggaatgaaaatgagccattgcggtctagagaattgggacatcgttcgaaaagtcatt
tgttcatcgtatttccatcacgcggcgcatttaaagaacttgtctacttactacaatatc
cagacaggcgtcgaatgcattgttcatcctacttcttcacttgctggtttatcatacatt
cctgaatacattgtttaccacgaattagtacttacaaagaggcattacttgcatggtgtg
acagcaattgatcctttgtggttgtcgcagatggctccggagtttttcaccgcaacagat
ttgtacggaaaccctttggaagaaggaaagccaaagccagaagatttggatgatttctct
caaagtcaaatgaaaagtgaagtgaaaaatgaggtacaaaaagaagtaaaagaaatacaa
cccaatcaaatcaagccacaggttgtacctattccatttgataagccattagaacttcct
tcttcagcacgtccaaaaagaagaaaattataa
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