Tachysurus vachellii: 132855510
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Entry
132855510 CDS
T09596
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
tvc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132855510 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132855510 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132855510 (prpf19)
04121 Ubiquitin system [BR:
tvc04121
]
132855510 (prpf19)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132855510 (prpf19)
Enzymes [BR:
tvc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132855510 (prpf19)
Spliceosome [BR:
tvc03041
]
Complex B
Other components
Prp19 complex
132855510 (prpf19)
Complex C
Prp19-CDC5 complex
132855510 (prpf19)
Ubiquitin system [BR:
tvc04121
]
Ubiquitin ligases (E3)
U-box type E3
132855510 (prpf19)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
132855510 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
U-box
PROPPIN
Nup160
Cytochrom_D1
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
132855510
NCBI-ProteinID:
XP_060740475
LinkDB
All DBs
Position
13:18679358..18686341
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLVDIKVAHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQVAPASQPAAVGAGGEPMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQASSHVGLHSASIPGILALDLCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPSQSLVFSASPDSTIRVWSLAAGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWTEVLNFTDHSGLVT
GVAFGEHAQFLSSTGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctcaaatgaggtaccggagcacccttgtgtctctccggtc
tccaatcaggtatttgaacgccgcctcatagagaaatacatcgctgagaatggagctgat
cccattaacggacaaccactgtctgaggagcagctggttgacatcaaggtcgctcaccct
attcgaccaaaggcaccatctgctaccagcatccctgccattctgaaatcccttcaagac
gagtgggatgcagtgatgctgcacagtttcacactgcgccagcagttgcagacaacacgc
caggagctgtcacacgcactctaccaacacgatgccgcctgcagggttattgctcgtctc
actaaagaggtcactgctgccagagaggctttggccacactcaaacctcaagccggattg
gttgctccccaggttgctcctgcctcccagcctgcagcagtgggtgcgggtggtgagccc
atggaggtcagtgaacaggtgggaatgactccagagatcatccagaagctacaagacaag
gccactgtcctgaccaccgaaagaaagaagaggggaaagacagtgccagaggagctggtc
agagcagaggatctcagcaagtatcgccaagcgtcttcccatgttggtctgcacagtgcc
agcatccccggaatccttgctctggatttgtgtcccacagacaccaacaaagtgctcaca
ggtggcgcggataagaacgtggtggtgttcgatcgcagagaggagcagattgtggccact
ctcaaaggccacaccaaaaaagtctcctctgtcatctaccacccatctcagtcactggtg
ttttcagcatctccagatagcaccatccgtgtgtggtctcttgcagctggaaactgtgtg
caggtggtcagagctcatgaggcaggagttactggcctctccctgcatgctactggggat
tacctgctgagttcctctgaggatcagtactgggccttctctgatatccaaactggtcgt
gttctcacgaaagtcacagatgagacagcaggatgtgcgctgacctgtgctcagttccac
cctgacggtctgattttcggtaccggtacagcagactcgcagattaagatttgggatctg
aaggagcgcactaatgtggccaatttccctggtcactctggtccggtcaccgccatcgcc
ttctctgagaatggatactaccttgctactggtgctcaggatagctctctgaagctgtgg
gatctgaggaagttgaagaactttaagacaattactttggataataactatgaggtgaag
tctctggtgtttgatcagagtggaacgtacctggctgttggagggtctgatattcgagtt
tacatttgcaaacagtggactgaggttctcaacttcactgatcactcaggtttggtgact
ggtgtggcttttggtgagcatgctcagttcctgtcatctactggtatggacagaagcctc
aagttctacagcctgtag
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