Thermoplasma volcanium: TVG1298537
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Entry
TVG1298537 CDS
T00042
Symbol
TVG1298537
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tvo
Thermoplasma volcanium
Pathway
tvo03030
DNA replication
tvo03410
Base excision repair
tvo03420
Nucleotide excision repair
tvo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TVG1298537 (TVG1298537)
03410 Base excision repair
TVG1298537 (TVG1298537)
03420 Nucleotide excision repair
TVG1298537 (TVG1298537)
03430 Mismatch repair
TVG1298537 (TVG1298537)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvo03032
]
TVG1298537 (TVG1298537)
03400 DNA repair and recombination proteins [BR:
tvo03400
]
TVG1298537 (TVG1298537)
Enzymes [BR:
tvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TVG1298537 (TVG1298537)
6.5.1.6 DNA ligase (ATP or NAD+)
TVG1298537 (TVG1298537)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TVG1298537 (TVG1298537)
DNA replication proteins [BR:
tvo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TVG1298537 (TVG1298537)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TVG1298537 (TVG1298537)
DNA repair and recombination proteins [BR:
tvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TVG1298537 (TVG1298537)
NER (nucleotide excision repair)
Other NER factors
TVG1298537 (TVG1298537)
MMR (mismatch excision repair)
Other MMR factors
TVG1298537 (TVG1298537)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAB60403
UniProt:
Q979A1
LinkDB
All DBs
Position
complement(1298537..1300303)
Genome browser
AA seq
588 aa
AA seq
DB search
MKFSLVTDAFEKMSKTTKRTELTEILVELLKSADEDLQSLVYLIEGKLAPDYQGIETQMS
DKLIIKALSIVSNIPEEAVSETYSKLGDIGSVAREIAAKKNMRSLVNEDLTVKYVHDTLM
RMAKTSGSGSTKARIDAYVDLALSGTPADLMYITRIITGKLRIGVSDATILDAIILAFSD
EKYSEEIENAYNFHPDLGYIAVQLRLGNLESVINMGPTPMVPFKVMLAERLRSVDEIVQK
MNGKCAFEYKYDGMRTEIHIVDEKVRLFSRGNEETTGQFPDIVKSAKETFHVSSVILDGE
AVPYNPETGELYPFQVISQRRGRKYDLDKVSNEIPITVFLFDIVYINGKDLSKTPYAERR
RILEGLFKENDNFKLAKRIVSSDTGTITKFFNQAIEDGCEGLVAKSMADDSYYKAGARGW
LWIKLKRDYQAQLWDTIDLTVVGAFMGHGRRSGTYGALLLATYNEKNDTFETVCKLGSGF
TDDVLFSLPKRFAEFVSKEKPARVVSTIEPDVWIYPSIVMEIIGAEITISPVHTCAFGII
EKDAGLSIRFPRFTGKWRDDKKPEDSTTTQEIIEMYKEQKKTLTEEKS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcactggtaacggacgcttttgagaagatgtcaaagacgactaagcgcaca
gaacttacggaaatattggtagagctccttaaatccgcagatgaagacttacaatccctt
gtttatctaattgagggaaaacttgctccagattaccagggcatagaaactcagatgtct
gataaactcataataaaagcactctccatagtttcaaatataccggaggaagctgtatca
gaaacttactccaagctaggagatatcggatccgtggcaagagaaattgcagcgaaaaaa
aacatgagatctctcgtgaatgaggatttaaccgttaagtacgtacacgatacacttatg
agaatggcgaaaactagcggttcaggaagtacaaaggctagaatagatgcctatgtagac
ttggctcttagcgggactcctgccgatctcatgtatataactcggataataacaggaaaa
ctccgtattggtgtatccgatgcgacaatacttgacgcaataatcctggctttttcagat
gaaaagtacagcgaggaaatagagaatgcatataatttccatcccgatctcggatacata
gctgtacagttaagattaggaaacttagaatcagtaataaacatgggccccaccccaatg
gttccgtttaaggtaatgttagctgaacgactacgttctgtagatgaaatagtccaaaaa
atgaacggtaaatgtgctttcgaatacaagtacgacggtatgcgaacagagatccatata
gtagatgaaaaagtgaggttgttttcgagaggaaacgaagaaactacaggtcaatttcct
gatatagtgaaatcggctaaagaaactttccatgtctcttctgttatactggatggggaa
gctgttccctacaacccagagacaggggaactttatcccttccaggttatttctcagaga
aggggccggaagtatgacctcgataaagtttccaacgaaattccaataaccgtttttctc
ttcgatatagtatatatcaatggaaaagatctgtcaaagactccatatgctgaacggcgc
aggatccttgaaggtcttttcaaggaaaatgacaatttcaaactggctaagaggattgta
tcaagtgatactggaaccataacaaagttctttaatcaagcaatagaagacggatgcgag
ggccttgttgccaagagcatggccgatgattcttattataaggctggtgctaggggatgg
ctttggataaaactaaagagagactatcaggcccagctttgggatactattgatctaacg
gtagttggtgcattcatgggccacggaagaaggagtggaacgtacggcgctttgcttctt
gcaacttataacgaaaagaatgatactttcgaaactgtgtgtaaacttggttcgggattt
acagatgatgttctattttcgttgccaaaaaggtttgctgagtttgtcagcaaagaaaaa
ccagccagagttgtaagcactatcgaaccagatgtttggatatacccctcaattgtcatg
gagataataggcgctgaaataacaataagccctgtacatacgtgtgccttcggcataata
gaaaaagatgcaggcttgtctataagattccccaggttcaccggcaaatggagagacgac
aaaaaaccagaagattctacaacaactcaggaaataatagaaatgtacaaggaacagaaa
aaaacattaacagaagagaagagttaa
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