Trametes versicolor: TRAVEDRAFT_139304
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Entry
TRAVEDRAFT_139304 CDS
T04795
Name
(RefSeq) cleavage polyadenylation factor subunit FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tvs
Trametes versicolor
Pathway
tvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRAVEDRAFT_139304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_139304
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRAVEDRAFT_139304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
19409109
NCBI-ProteinID:
XP_008032920
JGI:
139304
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MEPQSRSLDFRNQPGRPPAARSTSATFSTPQRAPPQQQPSLTTEYTPRERGAVAKPSSTP
QPSAQAQTQATQSPLPALAATPGTTEKIHVQEGEIESNKDSGPDPSTLPPAKAPPSHPSI
NPSAPGTVDGRSILEYDLNAMAEKPWRRPGSDLSDWFNYGFDEISWEAYCYRRRELGELA
TMLKSNVLGFAGMPEDQLIALPPEVRTMVMAGATAVMANGGGGGPGGGGMIPPGAGMNMN
GGMMNQMMGMGQMMNPMMDMSMGDMGMMQDGSGGGGGPQGGGQEGMGMNVGGFVPENGQG
MMGMGMSEFGGMQDPSGMGQQMYPGMDGSGTPTPVAPARGVHQGQFRGRGMGQGLGLRGR
GAGFAGRGRGTPVRPASPLPPNVPTGPRNKNKYKDIDGSAPAVEGLDYGGGGGGGNGERE
RSEREHSRGDRKERGTPDAVEETSISTRSSRKRRGSTDRDESRSSKRR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgcagtcgcgctccctggacttccggaatcaaccgggtcgaccaccagcagcc
cgttctactagcgccacattttcaacaccacagagagctccgccgcaacagcaaccgtca
ttaactaccgaatacacaccccgtgaaaggggagctgtcgccaagccttcctccacccca
cagccctctgcacaagcacaaacacaagcaacgcaatcacctctacccgcactagccgcg
accccggggaccacagaaaagatacacgttcaagaaggggagatcgagagtaacaaggac
tctggtcctgaccccagcacactcccgcctgcgaaggcgcccccctctcatccgtctatc
aacccttccgccccgggcactgtcgatggccggtcgatactcgaatatgaccttaacgcc
atggcggagaagccttggagaaggccagggtctgacttgagtgattggtttaactatggc
tttgacgaaatctcgtgggaggcgtactgttacagaagacgggagctgggcgagcttgcc
actatgctgaagagcaatgttcttgggttcgctggcatgccggaggaccagctcatcgcc
ctccctccggaagtccgcacaatggtcatggcaggcgcaacggctgtcatggccaacggt
ggtggcggaggtcccggagggggcggtatgatccctcccggggcagggatgaacatgaac
ggcgggatgatgaaccagatgatgggcatgggccagatgatgaaccccatgatggacatg
agcatgggcgacatgggcatgatgcaggacggctcaggtggcggcggcggaccccagggt
ggtgggcaggaaggtatgggtatgaacgttggcggcttcgtgcccgagaacggacagggc
atgatgggcatgggcatgagcgagtttggcgggatgcaggatccgtcaggcatggggcag
cagatgtacccgggcatggacggcagcggcaccccgacgcccgttgcgccagctcgggga
gtacaccaaggacagttccggggccggggtatgggacagggtttgggtctgcgcggacga
ggcgcaggattcgctggccgcgggagaggaacgcctgtgcggcctgcttcgccccttccg
cctaacgtgcctacgggcccgcgaaacaagaataagtacaaggacatcgacggtagtgca
cctgcggtcgaaggcctcgactatggcggtggaggcggaggcggcaatggtgagcgcgaa
cgcagtgagcgggagcatagccgtggcgacaggaaagaacgcggtacacctgacgcagtg
gaagaaaccagcatcagcaccaggagcagcaggaagcggagaggctcgacggatcgggat
gagagcaggagctctaagaggagatag
DBGET
integrated database retrieval system
