Thermoanaerobacter wiegelii: Thewi_2144
Help
Entry
Thewi_2144 CDS
T01607
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
twi
Thermoanaerobacter wiegelii
Pathway
twi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
twi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Thewi_2144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twi03400
]
Thewi_2144
Enzymes [BR:
twi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Thewi_2144
DNA repair and recombination proteins [BR:
twi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Thewi_2144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEM79494
UniProt:
G2MTV9
LinkDB
All DBs
Position
2172084..2173007
Genome browser
AA seq
307 aa
AA seq
DB search
MSMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSSKTRLQDRRLVDITYKFPDL
ALLHKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLLKINLLSKIMPVIFITWDIL
YLNGKPLVELPLIERKDILRKTVKENEIIKISDFIFEHGKMLFEETGKKGLEGIVAKKAD
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRAPSFIQFEYNVK
PEECRFE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgatagaagaaaaaatatcacctatgctggcatccagcagtgacccttttgat
agccccgagtggatatatgaaatcaaatgggatggttcaaggactattgctttcctttct
agtaaaacaagacttcaagatagaaggcttgttgatataacctataagtttccagatttg
gcattacttcataagcaaataaaagcaaaagaagcaatacttgacggtgaacttgtagtc
ttaaaaaacggcaagcctagttacaaaagcattatgtcaagaaagcatcagcaaaattta
ttaaaaataaatcttttaagcaagataatgcctgtaattttcataacatgggatatattg
tacttaaacggcaaacctcttgtagaattgccacttatagagagaaaagatatacttaga
aaaacagttaaagaaaacgagatcataaaaatatcagattttatatttgaacatggaaaa
atgctttttgaagagacagggaaaaaaggacttgaaggaattgttgccaaaaaagcagat
tcaaaatatttaataggaaaaaggagtaaactctggcttaagtcaaaacattttattgta
ataaatgctgttattatagggtacagaactgacaaaacagccctcatactggggctttac
gatgaggaaaataatttaataaacataggaagttgtgaatcaggcctatcccagaaggaa
ttaaaagcattctatgaagttgccaaggagataaaagccccagataattattataacttt
aaagaaaaaaatgtgcagtggttaaaacccttgctaacatgtaaagtgagatttatggaa
tggtctgaaaacatgaagatgagggcaccttcttttattcaatttgagtataacgtaaaa
ccagaagagtgcaggtttgaataa
DBGET
integrated database retrieval system
