Tripterygium wilfordii (thunder duke vine): 119991996
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Entry
119991996 CDS
T07256
Name
(RefSeq) histone deacetylase 9-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03082
ATP-dependent chromatin remodeling
twl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119991996
03083 Polycomb repressive complex
119991996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
twl03036
]
119991996
Enzymes [BR:
twl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119991996
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
119991996
HDAC complexes
Sin3A-HDAC complex
119991996
BRAF-HDAC complex
119991996
REST complex
119991996
SHIP complex
119991996
MiDAC complex
119991996
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
119991996
Heterochromatin formation proteins
Other heterochromatin formation proteins
119991996
Chromatin remodeling factors
NuRD complex
119991996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
119991996
NCBI-ProteinID:
XP_038694495
LinkDB
All DBs
Position
22:11658144..11663989
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKERISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTLHLFSSDLARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLYFPGTGDVKEVGEREGKFYAINVPLKDGIDDTSFIQLFKA
IISKVVETYQPGVVVLQCGADSLAGDRLGCFNLSIDGHAECVKFVKKFNLALLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNEYIKYFAPDHSLKIPSGHIENLNSKSYLSTIK
MQVLENLRYIQHAPSVQMQEVPPDFYIPDFDEDDQNPDERMNQHTQDKQIQREDEYYEGD
NDNDHHMDNS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgaaagaaagaatttcctatttctacgacggggatgttggaagcgtttacttt
ggtccaaaccaccccatgaaaccacaccggctctgtatgacccaccatctggtcctctca
tacgacctccacaagaagatggaaatttatcggccgcacaaggcatatccagttgagctt
gcccaatttcactcagcagattatgttgaatttttacatagaatcactcccgatactcta
catttgttctccagtgatttggccagatataatcttggagaagattgtcctgtcttcgat
aatttatttgaattttgccaaatatatgctggtggaacaatagatgccgcacgtagattg
aacaatcaactatgtgacattgctattaattgggctggtggattacaccatgccaagaag
tgtgcagcgtcgggcttctgttacatcaatgatctggttttagggatcttggagcttctc
aagtatcatgcccgtgttttatatattgacatagatgtgcatcatggtgatggagttgaa
gaagctttttatttcacagacagggtgatgactgttagttttcacaagtatggggattta
tactttcctggaactggtgatgttaaggaagtaggagaacgggaaggaaagttctatgcc
ataaatgtacccctcaaggatgggatagatgacactagcttcatccaacttttcaaggcg
attatctccaaggttgttgaaacctatcaaccaggtgtggtagttctccaatgtggggca
gattcacttgctggggaccgcttgggctgcttcaatctctctattgatgggcatgctgaa
tgtgtcaagtttgtgaaaaaattcaatttggccttactggttactggaggtgggggttac
acaaaagagaatgttgctcgatgctggactgttgaaacaggagtgcttttagacacagaa
cttcctaatgaaatcccagacaacgagtatataaaatattttgccccagatcactctttg
aagattccaagcggacacatagagaatttaaatagcaaatcatatcttagcacaatcaaa
atgcaagtgttggagaatcttcgctacatccaacatgctcctagcgtacagatgcaagag
gttccacctgacttttatatccctgattttgatgaagatgaccagaaccccgacgaacgc
atgaatcagcacacccaggacaagcaaatacagcgtgaagatgaatattacgagggagac
aatgataatgatcatcacatggacaattcatga
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