Tripterygium wilfordii (thunder duke vine): 120010331
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Entry
120010331 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120010331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
120010331
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120010331
Spliceosome [BR:
twl03041
]
Complex A
U2 snRNP components
U2 related factors
120010331
Complex B
120010331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120010331
NCBI-ProteinID:
XP_038717034
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All DBs
Position
12:complement(3240374..3248503)
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AA seq
1153 aa
AA seq
DB search
MEDVKHKSRKEDTERKEESRKKQRDRGRERERDKERNGERHKDREKRDRESRRSQRERSS
DSDEVQEREREKEKEKHRDRDKDRARDRKRDKERDRDREDKYKEREKEREEKRERAREKE
REREREREREKRERDKEEQEKERRERDREERERAREKRERERGREKRIREREKRHDVDSD
DTDGSRDHDKKRHRRDDNDDEERERERSISRSQRRKDDTEESPRKRSSEDDSDKKEKTRE
EVIEDEQQKLDEEMEKRRRRVQEWQELKRKKEEFEREKHGEVDADEPKAGKTWTLEGESD
DEEAPLVGKSEADMDMDEDASTGKEVGDTMVVDSENGTAAPLQNGADIVDGADEIDPLDA
FMNTMVLPEVEKLSNTVVSSTVVGNHMEPAKERREHSSNRERPKKGSNKSLGRIIPGEDS
DSDYGDLEKDENNLEDEDDDEFMKRVKKTKVEKLSLVDHSKIDYEPFRRNFYIEVKELAK
MTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLPSKILETIKKLNFENPTAIQAQALPV
IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGPIGLIMAPTRELVQQIHSDI
KKFAKVLGTRCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY
FVMDEADRMFDMGFEPQITRIVQNIRPNRQTVLFSATFPRQVEILARKVLSKPVEIQVGG
RSVVNKDITQSIELRPENERFLRLLELLGQWYEKGKILIFVHTQEKCDALYKDLVDRGYP
CLSLHGAKDQTDRESTISDFKSNVSSVLIATSVAARGLDVKELELVVNFDAPNHYEDYVH
RVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPGDLKALADNFMAKVNQGLE
QAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQQA
TLAQIAAFAAASKAGTASMQTPITTTQLLPNGGLPVSLPGVLNIAIPGTAAVVPGTGLPL
NPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPI
SDWTGAAITTRGQYFPPGRVTAQGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALS
LPGGAQPGRYSVV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtgaaacataaatccaggaaggaggatacagagaggaaggaggaatccagg
aaaaaacaacgtgaccgtggtcgtgagagagaaagagataaggagaggaacggagagagg
cacaaggacagggagaagagagacagggaaagcaggcgttctcagagagagaggagtagt
gattctgatgaggtacaggagagggagagggagaaggagaaggagaagcacagagacagg
gacaaggatagagctagagacaggaagagagataaagagagagacagggacagagaagat
aaatataaggagagggagaaagagagagaagagaagagggagagggctagggagaaagag
agggagagggagagggagcgagaacgggagaagagggaacgtgacaaggaggagcaagaa
aaggagcggagggaacgtgacagagaagaacgagagagagcaagggagaagagggagcgt
gagagagggagggagaagaggataagggaaagggagaaacgtcatgacgttgacagtgat
gatactgatggctctagggatcatgacaagaagcggcacaggagggatgataatgacgac
gaggagagagaacgtgaacgtagcattagcaggtcacaaaggcgcaaggatgacactgaa
gagagcccaagaaaaagaagcagtgaggatgactcagataagaaagaaaaaacccgagaa
gaggtaatagaggatgaacaacagaaactggacgaggaaatggagaagaggaggcggaga
gttcaagagtggcaagagttgaagagaaagaaggaggaatttgagcgagaaaagcatggg
gaagtggatgcagatgaacccaaggctggtaagacctggactcttgaaggagaatcggac
gatgaggaggcacctcttgtaggaaaatcagaggcagacatggacatggacgaggatgct
agtactggtaaagaagttggagacacaatggtggttgactctgaaaacgggacagctgca
cctctgcaaaacggggctgatattgttgatggggctgatgaaattgatccattagatgct
ttcatgaatactatggtcttgcctgaggttgaaaagctaagtaatactgtggtttcatca
actgttgttggtaatcatatggaaccggcaaaggagaggagggaacatagtagcaatcgt
gaaaggccaaagaaaggttccaataaatcattgggaagaataattccaggtgaggattct
gattcagattatggggaccttgagaaggatgaaaataatttagaagatgaagatgatgac
gagttcatgaaaagagtgaagaagacaaaagttgagaaattatcccttgttgatcactca
aagattgactatgaaccgttccgaagaaatttctatatcgaggtgaaggagcttgcaaag
atgactcctgaagaggttgctgcttacagaaaagaattggaattgaagattcacggaaag
gatgtaccaaaaccagtgaaatcatggcaccaaacaggacttccaagtaaaattttagag
actataaagaagcttaactttgaaaatccaacagcaattcaagcacaggcgctgccagtt
attatgagtggtcgggactgcataggtgttgcaaaaactggctctgggaaaactctggca
tttgtgcttccaatgttgagacatataaaggaccagcctcctgtggaagcaggagacggg
cctattgggcttataatggcacctacaagggagcttgtccagcaaatccacagtgatata
aaaaagtttgcgaaggtattgggtactagatgtgtgcctgtgtacggcggttctggtgtt
gcccaacagatcagtgacttaaaacgggggactgagattgttgtctgtactcctggtagg
atgattgacattttgtgtactagtggaggaaagataacaaatctgcgtagagtcacctat
tttgttatggatgaagctgatcgaatgtttgatatgggttttgaacctcagatcacacga
attgtccaaaatattaggccaaatcgtcagacagtactgttttctgccacttttcctcga
caggttgaaattttggctcgtaaagtattgagcaaacctgttgaaatacaggttggtggg
agaagtgtggtgaacaaggacataacccagtcaattgagttgaggccggagaatgagagg
ttcttaagacttttggaactattaggtcaatggtatgagaaaggaaagattttgatattt
gtccacacacaggaaaaatgtgatgctttgtataaggatttagttgaccgtggttaccct
tgcctttctcttcatggggctaaggaccaaacagaccgtgaatccaccatttctgacttc
aaaagcaatgtcagcagtgttttgattgcaacaagtgttgcagccaggggtttagatgtg
aaagaactcgaacttgtggtcaactttgatgctccaaaccattatgaagattatgttcac
cgtgttggtagaactggccgagctggtcgtaaaggttgtgccattactttcatatctgag
gaggatgctagatatgcaccagatcttgtaaaagctttggaactttctgagcaagttgtt
cctggagacctaaaagctcttgcagataattttatggcaaaagtgaatcaggggcttgag
caagctcatggaactggttatggtggaagtggctttaaattcaatgaagaggaggatgag
aagaggaaagcggcaaaaaaagcacaggcaaaagaatatggttttgaggaagacaagtca
gattcagaagatgaagatgaaggaatcaggaaggcaggtggtgatatctcgcagcaagcc
acccttgctcagattgctgcctttgctgctgcctccaaagccggtacagcttcaatgcag
actcctattacaactacccaattgctacccaatggtggactacctgtttctctgcctgga
gtcttaaacatagcaattcccggtacagctgctgttgtgcctggaactgggctgcctctt
aatcccaatgatggggcagctcgggccgcagcattggcagctgctatcaacctgcagcat
aatttggcaaagattcaggctgatgcaatgcctgaacactatgaagcagagttggaaatc
aatgacttcccccaaaatgctcggtggaaggtcactcacaaggaaacattgggtccgatc
tcagactggactggagctgctattacgaccagggggcagtatttccctccaggccgggtc
acagcacaaggagagcgcaagctttatttgttcattgagggtcccactgagcagtctgtt
aagagagcaaaagcagaattaaaacgtgttctagaagacattacaaaccaggccttgtca
cttccaggtggagctcaaccaggcagatactcggttgtataa
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