Thiothrix winogradskyi: L2Y54_19700
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Entry
L2Y54_19700 CDS
T08347
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
twn
Thiothrix winogradskyi
Pathway
twn02020
Two-component system
twn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L2Y54_19700
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L2Y54_19700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twn03021
]
L2Y54_19700
Transcription machinery [BR:
twn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L2Y54_19700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
UJS24128
LinkDB
All DBs
Position
3982972..3984465
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AA seq
497 aa
AA seq
DB search
MLRQGFDLKLGQTLSMTPQLQQAIRLLQLSSLELQNEIQQALEENPLLQLAEDTDDSRPE
PVTELANLTDHSNDSKPDNEATVDAPDDASPFDQDIPDELHMDAEWEDVYDTRSSNSDGN
GDNSGFLENQGDTADSGLQEHLLWQIRMSNLTNIDKQIATVIISSLDDAGYLCDPLEDIL
ESLSAELPIDLDDVEVVLKFIQQLDPLGVGARNLRECLLIQLAHLPESRLLFKARHLVEK
HLDLMERRDYKEISKRLKIEQGELEEILLLLRSLQPRPGSAYSSSAADYIVPDAYVRKIK
GDWVVSLNAQVTPNLQVNQYYADMLGQVKSERDATYFKSNLQQAKWLIRSVESRNSTLLG
VAKAIVERQSAFMQYGEQAMKPLILRDIAEELEMHESTISRVTTNKYLHTPRGIFEFKYF
FSSQVDTDTGSSCSSTAIRAMLKKLINEENQSSPLSDNQLTALLNQQGINVARRTVAKYR
EAMLIPSSHDRKALLPT
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctcagacagggattcgatctcaaacttggtcagacactttccatgacaccgcagttg
cagcaagccattcgcttgttgcaattgtcatcactggagttgcagaacgaaatccagcaa
gccttggaagaaaaccccttgctgcaattagccgaggataccgacgactcacgccctgag
cctgttaccgaacttgctaaccttaccgaccacagtaacgacagcaaacccgacaacgag
gctaccgttgacgcacccgatgacgcctccccgtttgaccaagacattcctgacgaattg
cacatggatgccgaatgggaagatgtctacgacacccgcagcagcaacagtgacggcaat
ggcgataacagcggtttcttagaaaatcaaggtgataccgccgacagtggcttgcaggaa
catctcctgtggcaaatccgcatgagcaacctcaccaatatcgacaaacaaattgccacc
gtgattattagctcgctggatgatgcggggtatttgtgcgatccgctggaagatattcta
gaatcgctcagcgcggaactgcccatcgaccttgacgatgtggaagtcgtgctcaagttc
atccaacaacttgacccgttaggggtgggtgcacgcaacttacgcgagtgcctgctgatt
caacttgcacacctacccgaaagccgtttactcttcaaagcccgtcatttagttgaaaaa
catctggacttgatggaacgacgcgactataaagaaattagcaagcggttgaaaatagaa
cagggtgagctagaggaaatcctcttattgttgcgtagcttacaaccgcgtccggggagt
gcttattcgtcatcggcggctgattacatcgtgccggatgcgtatgtccgtaagatcaaa
ggagactgggtggtttcactgaatgcacaagtcacaccaaatctgcaagttaatcagtac
tatgcagacatgctgggtcaagtaaagagtgaacgggacgccacttatttcaagtccaac
ctgcaacaagctaagtggttaattcgcagtgtggagagccgcaactcaaccttattaggt
gttgccaaagcaatagttgaacgccaaagcgctttcatgcaatatggagaacaggcgatg
aagccactcattctccgggacattgcagaagagctagaaatgcacgaatccaccatttcc
cgcgtcaccaccaacaaatacctgcataccccgcgtggtatctttgaattcaaatacttc
ttttccagccaagtagacaccgataccgggtctagctgttcctccacggcgattcgcgcc
atgctcaaaaaactaatcaacgaggaaaatcagagttcgcctttgagtgacaatcaattg
actgctttgctgaatcagcaaggcattaatgtagcgcggcgcaccgtcgccaagtaccgt
gaagccatgttgattccgtcatcgcatgaccggaaagcattgcttccgacctaa
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