Thalassospira xiamenensis: TH3_20880
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Entry
TH3_20880 CDS
T03639
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
txi
Thalassospira xiamenensis
Pathway
txi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
txi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TH3_20880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
txi03400
]
TH3_20880
Enzymes [BR:
txi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TH3_20880
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TH3_20880
DNA repair and recombination proteins [BR:
txi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TH3_20880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AJD54278
UniProt:
A0A0B4Y6J1
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All DBs
Position
4574020..4574859
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AA seq
279 aa
AA seq
DB search
MPELPEVETVTRGLTPVMEGFVVDHVVQRRPNLRFPFPENFVGRMAGRRINQLTRRAKYI
LGYLDDGQVLLVHLGMSGRMTIFDDPLVRVPAPAKHDHVDFVMQSGAVVRFTDPRRFGVI
TLIAADEVNTHKMLVDIGPEPLGNSFNATVLAAGIAKRASPIKTVLLDQRLVAGLGNIYV
CEALFRSGIAPDRLAKDLKPDEIERLYREIRLVLEDAIAAGGSSLKDHRQANGELGYFQH
SFRVYGREGEGCSADGCGSTVGRIVQAGRSTFFCPTCQK
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcctgaagtcgaaacggtgacacgcggtctgacgccggtgatggaaggt
ttcgtggttgatcacgttgtgcaacgccgtccaaacctgcgttttccatttccggaaaat
tttgtgggacgcatggcggggcgccggatcaatcagctgacccgtcgggcaaaatatatc
ctgggctatctggatgacgggcaggttttgttggtccatcttggaatgtcgggccggatg
acgatttttgatgatcccttggtgcgggttccagcccctgcaaagcacgatcacgtcgat
tttgtcatgcagagtggagcggttgtccggtttaccgatccgcggcggttcggtgtcatc
accctgattgctgcggacgaggttaacacccacaagatgcttgtcgatattgggccggaa
ccattgggcaacagttttaatgcgaccgttctggcggcgggaatagccaaacgcgcaagt
ccgatcaaaacggtgctgcttgatcagcgattggttgcgggacttggtaatatctatgta
tgcgaagcattgttcagatcgggcatcgcgccggaccgtttggccaaggatttgaaaccg
gacgagattgaacgtctttaccgggaaatccggttggttcttgaggacgcgattgccgcc
ggaggatcgagcctgaaagatcatcgtcaggccaatggcgagcttggctattttcagcac
agcttccgcgtctatggccgagagggtgagggttgctctgccgatggttgcggcagcacc
gtcgggcgaatcgtacaggcagggcgatcaaccttcttctgcccgacatgtcagaaataa
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