Thermodesulfovibrio yellowstonii: THEYE_A0953
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Entry
THEYE_A0953 CDS
T00775
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tye
Thermodesulfovibrio yellowstonii
Pathway
tye02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THEYE_A0953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tye03021
]
THEYE_A0953
Transcription machinery [BR:
tye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THEYE_A0953
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
AICARFT_IMPCHas
Herpes_TAF50
AATF-Che1
Motif
Other DBs
NCBI-ProteinID:
ACI20531
UniProt:
B5YKM1
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All DBs
Position
921190..922629
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AA seq
479 aa
AA seq
DB search
MKERDIFEEIVNLGKKRGKLTYDEINEALPSEYYSPEEIEDLIDVLSDMGVRVVDEDEEE
VFLEEEEEIEEEEHVEDLVQAYFNSMGDIPILTKEEEVELAKKLQEGKSIIKETVMGLSL
YQKILEEINKEEDSETLTEEDKAEEALSRTIIRLENLINDIEKIEQKIKEYGSLKELRKQ
INEKKRVGENTKQLENLYKEIHAEIKKIENESGLKIDELKNIWQKIYKAKCLVEDTKNEL
ITRNLRLVVNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAI
TRALIDQTKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFR
AIQDPIGLQTPIGDEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIK
MRFGIGEDRDHTLEEVGRYLSITRERVRQIETKALRKLKHPSRMRLLKMLTSDIVENKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaagagatatttttgaagaaattgtaaatcttggcaaaaaaaggggaaaactc
acatatgatgaaattaatgaagccctgccgtcagaatactattctcctgaggagattgag
gacctaatagatgttttaagtgatatgggagtgagagtagttgatgaagacgaagaagaa
gtatttttagaagaagaggaagaaattgaagaggaagaacatgtagaggatttagttcaa
gcatattttaattcaatgggagatattccaatacttaccaaagaagaggaagtagaactt
gctaaaaaacttcaggaaggaaaaagtataattaaagagacggtgatgggactatctctt
tatcaaaaaattttagaagaaataaataaggaggaagattctgaaactttaactgaagaa
gataaagctgaagaagcattaagcagaacaattattcgtttagaaaatttaataaatgat
attgaaaagatagaacaaaaaatcaaagagtatggttctttaaaagagttgcgtaaacaa
ataaatgagaaaaagagagtaggtgaaaatacaaaacaattagaaaatctttataaagaa
attcatgcagagattaaaaaaattgaaaatgaatcaggacttaagatagatgaattaaaa
aatatttggcaaaagatatataaagctaaatgccttgttgaagatacaaaaaatgaatta
attacgagaaatttaagacttgttgtgaatattgcaaaaaactatgttggaaggggactt
cctcttcttgatttgatagaggaaggcaatataggacttatgaaagctgttgataaattt
aagtatgaaaaaggatttaagttttctacttatgcaacttggtggattagacaggctatt
acgagagctttaattgaccaaactaagacaataagggtgcctgttcatatgatggagttc
tataatagagttactaaagcttcccgtgaacttactcaacaacttggtagagaaccaaat
aatgaggaaattgctgaaaaactcggagttcctgtaagaaaagtagaagaagttttcaga
gctatacaggatcctataggacttcaaacgcctataggagacgaagatacagagttagaa
gattttattggagataaaacatccccttctcctgtttcagaagctgaaagaacagagctt
agtgagcatattcagcgaattttgaaaactctaaccccaaaagaagaaaaagtaataaaa
atgagattcggaattggtgaagatagagatcatacacttgaagaagttggaagatattta
tctattacaagagaaagagtgcggcaaattgagacaaaagctttgagaaaacttaaacat
ccaagtagaatgagacttcttaagatgttaacaagtgatattgtagaaaacaaaaagtga
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