Umezawaea sp. Da 62-37: RM788_30340
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Entry
RM788_30340 CDS
T09853
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume03420
Nucleotide excision repair
ume03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RM788_30340
03430 Mismatch repair
RM788_30340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ume03400
]
RM788_30340
Enzymes [BR:
ume01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RM788_30340
DNA repair and recombination proteins [BR:
ume03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RM788_30340
MMR (mismatch excision repair)
Other MMR factors
RM788_30340
BRITE hierarchy
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Replic_Relax
Motif
Other DBs
NCBI-ProteinID:
WNV82494
LinkDB
All DBs
Position
6555221..6558745
Genome browser
AA seq
1174 aa
AA seq
DB search
MSFASPFEVATALGLPKPTAEQAAVVAAPIEPALVVAGAGAGKTETMAARVVWLVANGIV
TPDQVLGLTFTRKAARQLAERIRLRLRRLAGSELLDELDPSGERRASVMTAEPVVLTYHA
YAGRLVTEHGLRLPVEPGVRLLTGTSSWQLAHRVVSTWAEDLDTDKIPATITGYLLALAG
ELGEHLVEPKALREHADRLIGVIENAPKTARQGDGLPQKLRDIIAAQRLRVNLLPLLDAY
QQRKRREAAMDFADQMSLAARLANEHPEVAQGERERYGAVLLDEYQDTGHAQRVLLRSLF
GRGEPMPVTSVGDPAQAIYGWRGASAANLPRFTTDFPAPEGKPATRYGLLTSFRNPPEVL
TLANAVSGPLRAAGLEVDELRARDGAGPGDVRLALLPDVRQELDWLADSVARQWQEHLDE
EDTPPTAAVLVRRRADMGAIAAALRERGLPVEVVGLGGLLDEPEVRDLTSALRVLVNPLA
GTAAARLLTGSRWRVAAFDLAALWQRARELAGAPSRQSVVDDPLSVLADALPGEHAEQAG
LADALDDPGDPAAYSAEGYRRIRRLGGELAALRRRLDQPLSELVADVERTLLLDIESMAR
PGGVGRAHLDAFADVVSDFAAASPSATLPSLLDYLYTAEHAEDGLEPGEVEVAENRVQIL
TMHSAKGLEWHIVAVPHIVKDVFPGRRKTSCWLKAVTELPADLRGDAADLPELRIPGGSD
RKQVEAALDLHAEEFEERRLVEERRLLYVALTRSEHSLLVSGHWWGETGGKVKGPSPFLV
EIHELFKTSENPPGEIVAWAGPPTEEEANPLAGEVKTAEWPADPLGKRRTAVADGAAMVL
AALDLRTRAPARPSEAPDVLPEELEGLVEPPEDEPDYEPPEDEPDPFDDLEGLVEPPEDE
EPAPEPVVEAVPEPVAELPAEPVAGALVDDEAPPEDEDDLDPEGWSRDVDVLLAERAAAA
NRREQVTMPEHLSVSQLVELAADPDQLARRLRRPLPFPPNPMARRGTAFHTWLEKRFGAS
RLLDIDELPGAADDGAAPDTELERLQRAFLASEWADRMPYDVEVPFEAEVDGMSVRGRMD
AVFADPDGGWTVVDWKTGSVPDADKMPALSVQLAAYRLAWAALIGAEVESVRAAFHYVQH
DHTLRPTDLLDAAGLRTLVRSVPDRSGQDRAARR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgccagcccgttcgaggtcgccaccgcgctggggctgcccaagcccacggcc
gagcaggcggcggtcgtggcggcgccgatcgaacccgcgctggtcgtggcgggcgccggg
gcgggcaagaccgagacgatggccgcccgcgtggtgtggctggtcgcgaacgggatcgtc
accccggaccaggtgctgggcctgacgttcacccgcaaggccgcccggcagctcgccgag
cgcatccggctgcggctgcgcaggctcgccggatcggagttgctcgacgagctggacccc
agcggcgagcggcgggcgtcggtgatgacggccgagccggtcgtgctgacctaccacgcg
tacgcgggcaggctggtgaccgagcacgggctgcggctgccggtcgaacccggtgtgcgg
ctgctgaccgggacgtcgtcgtggcagctcgcgcaccgcgtcgtgtcgacgtgggccgag
gacctggacaccgacaagatccccgccaccatcaccgggtacctgctggcgctcgccggt
gagctgggggagcacctggtggagccgaaggcgctgcgggagcacgcggaccggctgatc
ggggtcatcgagaacgcgccgaagaccgcgcggcagggcgacgggctgccccagaagctg
cgggacatcatcgcggcgcaacggctgcgggtgaacctgctgcccctgctggacgcctac
cagcagcgcaagcggcgtgaggcggcgatggacttcgccgaccagatgagcctcgccgcc
cgactggccaacgagcacccggaggtcgcgcagggcgagcgcgagcggtacggggcggtg
ctgctcgacgagtaccaggacaccgggcacgcgcagcgcgtgctgctgcggtcgctgttc
ggccggggcgagccgatgccggtcacctccgtcggcgacccggcgcaggccatctacggc
tggcgcggcgccagcgcggcgaacctgccccggttcaccacggacttcccggccccggag
gggaaacccgccacccggtacgggctgctgaccagcttccgcaacccgcccgaggtgctc
acgctggccaacgccgtgtccgggccgctgcgcgccgcgggcctggaggtcgacgagctg
cgcgcgcgcgacggcgccgggcccggcgacgtgcggctcgcgctgctgccggatgtgcgc
caggaactcgactggctcgcggactccgtcgcccggcagtggcaggagcacctggacgag
gaggacaccccgcccacggccgcggtgctcgtgcgccgccgcgcggacatgggcgccatc
gcggcggcgctgcgcgaacgcggactgccggtcgaggtcgtcggactcggcggcctgctg
gacgaacccgaggtgcgcgacctgacgtccgcgctgcgcgtgctggtgaacccgctggcg
ggcacggccgccgcccggctgctgaccggatcccgttggcgcgtggcggctttcgacctc
gccgccctgtggcagcgcgcccgcgagctggccggtgcgccgagccgccagtccgttgtg
gacgatccgctgtcggtgctggcggacgcgctgcccggtgagcacgccgaacaggccggg
ctggccgacgcgctggacgatccgggcgacccggcggcgtactcggcagagggctaccgg
cggatccgcaggctgggcggggaactggccgcgctgcggcgcaggctcgaccagccgctg
tccgaactggtcgccgacgtcgagcgcacgctgctgctcgacatcgagtcgatggcccgc
cccggcggggtcggccgcgcgcacctggacgcgttcgccgacgtcgtctcggacttcgca
gccgcgagcccgtccgcgaccctgccgtcgctgctggactacctctacaccgccgagcac
gccgaggacggcctggaacccggtgaggtcgaggtcgccgagaaccgggtgcagatcctg
accatgcactccgccaagggcctggagtggcacatcgtcgccgtgccgcacatcgtgaag
gacgtgttccccggccgccgcaagacgtcctgctggctcaaggccgtcaccgagctgccc
gccgacctgcgcggtgacgccgccgacctgccggagctgcggatccccggcgggagcgac
cgcaagcaggtcgaggcggcgctcgacctgcacgccgaggagttcgaggagcggcggctg
gtcgaggagcggcggctgctctacgtcgccctgacccgctccgagcacagcctgctggtg
tccgggcactggtggggcgagacgggcgggaaggtgaagggcccgtcgccgttcctggtg
gagatccacgagctgttcaagacctcggagaacccgcccggcgagatcgtcgcgtgggcg
gggccgccgaccgaggaggaggccaacccgctggcgggcgaggtgaagacggcggagtgg
cccgccgacccgctggggaagcggcgcaccgcggtcgccgacggcgccgcgatggtgctg
gccgcgctggacctgcggaccagggccccggcccggccctcggaggcgcccgacgtgctg
ccggaggagctggaggggctcgtggagccgcccgaggacgaaccggactacgagccgccg
gaggacgagcccgacccgttcgacgacctggaagggctggtggagcccccggaggacgag
gaacccgctccggagcccgtcgtggaggcggttccggaaccggtggccgagctgccggcc
gagccggtggccggggcactagtcgacgacgaagcgcccccggaggacgaggacgacctc
gacccggagggctggtcgcgcgacgtggacgtgctgctggccgaacgcgccgcggcggcc
aaccggcgcgagcaggtcaccatgcccgagcacctgtcggtcagccagctcgtcgagctg
gccgccgacccggaccagctcgcccgcaggctgcgccgcccgctgccgttcccgccgaac
ccgatggcccgccgcggcaccgcgttccacacgtggctggagaagcggttcggcgcgagc
aggctgctggacatcgacgagctccccggcgccgccgacgacggcgcggccccggacacc
gagctggaacggctccagcgggcgttcctggccagcgagtgggccgaccggatgccctac
gacgtcgaggtgccgttcgaggccgaggtcgacgggatgtccgtgcgcggccggatggac
gcggtgttcgcggacccggacggcggctggacggtcgtggactggaagaccggctcggtg
ccggacgcggacaagatgcccgcgctgtccgtgcagctggcggcctaccgactcgcctgg
gcggcgctcatcggcgcggaggtggagagcgtgcgggcggcgttccactacgtgcagcac
gaccacacgctgaggccgacggacctgctggacgcggcgggcctgcgaaccctcgtccgc
tcggtgccggaccgctccgggcaggaccgagcggctaggaggtga
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