KEGG   Undibacterium sp. KW1: UNDKW_0522
Entry
UNDKW_0522        CDS       T08678                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
und  Undibacterium sp. KW1
Pathway
und02020  Two-component system
und02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:und00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    UNDKW_0522 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    UNDKW_0522 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:und03021]
    UNDKW_0522 (rpoN)
Transcription machinery [BR:und03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     UNDKW_0522 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 TraG_N HTH_IclR HTH_Crp_2 HTH_23
Other DBs
NCBI-ProteinID: BBB58795
UniProt: A0A6N4SYP4
LinkDB
Position
complement(562345..563814)
AA seq 489 aa
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELETLLTDNPMLERVDDPLDHAVRL
LADGAINTSSTSADAGMEAPAAREDSDRSAEPATADAETVISNDSTTSSEEDWGFDDVQH
GSKSGDDEDGRPQLGAAHITLREHLLEQMRLNLREPRDRALVELMIDALDNNGYLTETLD
EIHASLPLELCVEPEELAFALNMLQSFDPAGVGARSPSECLALQIRRLPKVAFVTRRLAL
QIVETQLALFAQRDFTKLKKIFDCDDEDLRDAQTVIRLCKPRPGLAFAADESDYVVPDVI
VRKSGNGWQVMLNQDVMPRLRVSSMYANIMKQNRGEAGMGAQLQEARWLIKNMRQRFETI
LRVAQAIVERQRNFFTHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELK
YFFGSHVATETGGEASSTAIRALIKQLIGAEDQKSPLSDSKIADMLGEQGMVIARRTVAK
YREALKIPQ
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgaaacaaagcctgcaactacgtacctcacaacatctggccttaacgccgcaattgcag
caatcgatacgattattgcagttatccactttggaattgcatcaggagctggagacgctg
ctgaccgataatcccatgctggaacgcgtcgatgatccactcgatcacgccgtacgcctg
cttgccgacggcgccatcaataccagcagcacttctgccgatgccggcatggaagcaccg
gcagcaagagaagacagtgacaggtcagcagaaccggctaccgctgatgcagaaaccgtc
atcagcaatgacagcaccacctccagcgaagaagactggggctttgatgatgtgcagcat
ggcagcaagtctggcgatgatgaagatggccgcccccagcttggtgcagcccatatcacc
ctgcgtgaacacttgctggagcagatgcgcctgaacctgcgcgaaccgcgtgaccgtgcc
ctggtcgagctgatgatcgatgcgctcgacaataacggttacctgaccgaaacattagat
gaaatacatgccagtttgccactggaactgtgcgtagaaccagaagaactggcgtttgcg
ctgaacatgctgcaaagctttgacccggcaggtgtcggtgcgcgcagcccgtctgaatgc
ctggccttgcaaatcaggcgtttaccaaaagttgctttcgtcacacgcaggctggcattg
caaattgttgaaacgcaactcgctttatttgcacaaagagatttcaccaaactcaagaaa
atcttcgactgcgacgatgaagatttgcgcgatgcacaaactgtcatccgcctgtgcaaa
ccacgccccggcctggcctttgctgctgatgaatctgactatgtcgtacctgatgtgatc
gtcagaaaatccggtaacggctggcaagtcatgctgaatcaggatgtcatgcccaggctg
cgggtaagcagcatgtatgccaacatcatgaagcaaaaccgaggcgaggctggcatgggc
gcgcaattgcaggaagcccgctggctgatcaagaatatgcggcaacgttttgagactata
ttgcgcgttgcacaagcgatagtcgaaaggcaacgcaattttttcacccacggtgctgtt
gcaatgcgcccccttgttttgcgcgaaattgctgatacactaggattacacgagagcact
atctcacgtgtaacaacccaaaaatacatgttgaccccacatggcatgtttgagttgaag
tactttttcggcagccatgtcgcgacggaaacagggggtgaagcatcttccaccgcgata
cgtgcactcatcaagcagttgataggagcagaagaccagaaaagcccactctctgatagc
aaaattgcagacatgctgggtgaacagggcatggtaattgcccgacggacagttgccaaa
taccgtgaagccctcaaaatcccccagtga

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