Usitatibacter palustris: DSM104440_00929
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Entry
DSM104440_00929 CDS
T06995
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
upl
Usitatibacter palustris
Pathway
upl03030
DNA replication
upl03410
Base excision repair
upl03420
Nucleotide excision repair
upl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104440_00929 (ligA)
03410 Base excision repair
DSM104440_00929 (ligA)
03420 Nucleotide excision repair
DSM104440_00929 (ligA)
03430 Mismatch repair
DSM104440_00929 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
upl03032
]
DSM104440_00929 (ligA)
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_00929 (ligA)
Enzymes [BR:
upl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM104440_00929 (ligA)
DNA replication proteins [BR:
upl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104440_00929 (ligA)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM104440_00929 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104440_00929 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM104440_00929 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM104440_00929 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QJR14136
UniProt:
A0A6M4H3N3
LinkDB
All DBs
Position
902035..904053
Genome browser
AA seq
672 aa
AA seq
DB search
MGAKRDPAARVEELRREIERHNRLYHAEDAPEVSDAEYDALFRELQSLETAHPELLSPDS
PTQRVGAAPAEGFAAVAHRVPMLSLNNAFADEDVANFDRRCREGLERDAVEYACELKYDG
IAVTLAYEDGRFVQGATRGDGSTGEDVTINLRTIRAIPLRLDTKKPPRRLEIRGEVLMYR
RDFEALNAAAVAAGDKPFVNPRNAAAGGLRQLDPRLTAARRLSFMAYGIGAHEGFTMPAT
HAKLLEAIAALGFPVASDRKTVRGAEGLLEFYRAVGEKRPKLAFDIDGVVYKVNAFADQA
TLGFVSRAPRFAVAHKFPAEEATTELVDIDVQVGRTGAVTPVARLKPVFVGGTTITNATL
HNEDEVRRKEVWRRDTVVVRRAGDVIPEVARVAKAGPREKADWFEMPTKCPQCGSAIARL
EEESVARCTGGLICPAQRKGALLHFASRRAIDIEGLGDKLVDQLVDGQVVRTPADLYKLG
VAALSELERMAEKSAANVVTAIERSKDTTLARFIYALGIRNVGEVTARDLARHFGSLDAL
VHADVARLEEVPDVGPIVAESIHAFFAEPHNREVIWQLRAAGVHWKEGAGVAPKVSDGPF
AGKIVVLTGTLPGMSRDEAKERIEAAGGKVSGSVSKKTDFVIAGDEAGSKLDKARELGVT
VLDEVQFLEMLK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgcgaagcgcgaccccgccgcccgcgtcgaggagctgcggcgcgaaatcgaacgc
cacaaccgcctctaccacgccgaggacgcgcccgaggtttccgacgccgagtacgacgcg
ctctttcgcgagttgcagtcgctcgaaaccgcgcatccggagctcctgtcgcccgattca
ccgacgcagcgcgtgggcgccgcgcccgccgaaggctttgccgcggtcgcgcatcgcgtg
ccgatgctctcgctcaacaacgcgttcgccgacgaggatgtcgcgaacttcgatcgccgc
tgccgcgaaggcctggaacgcgacgcggtcgagtacgcgtgcgagctcaagtacgacggc
atcgcggtgacgctcgcctacgaggacggccggttcgtgcagggtgccacgcgcggcgac
ggctcgaccggcgaggacgtcaccatcaacctgcgcaccatccgcgcgattcccttgcgg
ctcgacacgaagaagccgcccaggcgcctggagatccgcggcgaggtcctcatgtaccgc
cgcgacttcgaagcactcaatgccgccgcggtggccgccggtgacaaacccttcgtgaat
ccgcgcaacgcggcagccgggggactacgccagctcgatccgcgcctcaccgccgcgcga
cgcctctcgttcatggcctacggcatcggcgcgcatgaaggcttcacgatgcccgcgacc
cacgcgaagctgctcgaggcgatcgcggccctgggatttcccgtggcgagcgaccgcaag
accgtgcgcggcgccgagggcctgctcgagttctatcgcgcggtcggcgagaagcgtccg
aagcttgccttcgacatcgacggcgtggtctacaaggtgaatgccttcgccgaccaggcc
acgctgggcttcgtttcccgcgcgccgcgcttcgcggtcgcgcacaagtttcccgctgaa
gaggccacgacggagctcgtcgacatcgatgtccaggtgggtcgcaccggcgcggtcacg
cccgtcgcgcgcctgaagcccgtgttcgtgggcggcaccacgatcacgaatgccacgctg
cacaacgaggatgaagttcggcgcaaggaagtgtggcgccgcgacaccgtcgtcgtgcgc
cgcgccggggacgtgattcccgaggtcgcgcgcgtcgcgaaggccgggccgcgcgagaaa
gccgactggttcgagatgccgacgaagtgcccgcaatgcggctcggcgatcgcgcgcctc
gaggaggaatcggtcgcgcgctgcaccggcggcctcatctgtccggcgcagaggaagggt
gcgctgctgcacttcgcctcgcgccgcgcgatcgacatcgaaggcctgggcgacaagctc
gtggaccagctcgtcgacgggcaggtggtgcgcaccccggccgatctctacaagctgggc
gtggcggcactctccgagctcgagcgcatggcggagaagtccgccgcgaacgtggtcacc
gcgatcgagcgcagcaaggacaccaccctcgcgcgtttcatctacgcgctgggtatccgc
aacgtcggcgaggtgaccgcgagggatctcgcgcgccacttcggttcgctcgatgcgctc
gtgcacgccgacgtcgcgcgcctcgaggaagtgcccgatgtcgggcccatcgtcgccgaa
tcgatccacgccttcttcgccgagccgcacaatcgcgaggtgatctggcagctgcgcgcc
gcgggcgtgcattggaaggaaggcgcaggcgtggcgccgaaggtgagcgacggacccttc
gcaggtaagattgtggtcctgaccggaacgcttccgggcatgtcgcgcgacgaagcgaag
gaacgcatcgaagccgccggcggcaaggtgagcggctcggtgtccaagaagaccgatttc
gtcatcgccggcgacgaagccggatcgaaactcgacaaggcgcgcgagctgggcgtcacc
gtactggacgaagtgcaattcctcgagatgctcaaatga
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