Undibacterium parvum: EJN92_03990
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Entry
EJN92_03990 CDS
T05754
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
upv
Undibacterium parvum
Pathway
upv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EJN92_03990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
upv03021
]
EJN92_03990 (rpoD)
Transcription machinery [BR:
upv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EJN92_03990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4238
Motif
Other DBs
NCBI-ProteinID:
AZP11236
UniProt:
A0A3S9HGL9
LinkDB
All DBs
Position
complement(928640..931333)
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AA seq
897 aa
AA seq
DB search
MKKPAQKLASVKAPVTAKNAAIKPASKAIPKSSAATAVGKLVEKKTPATGAVKSSPLKSA
AKKELAKDVKAPKVIKTAVAQPLAKVASKPVKAASRVSQEPKPVSKLVKPTGKEIQGKNA
KPAQELTAPNSGRQTGKNADKPQTAPLKASVTINKTDSKTVIKPTKSSAKAEKTPEVQEI
KTGSAPTVSQTTDAAVLAAIDTSGYILPGVKVPGRRGRKPKEYQPENEEMAALNAVERAE
MKAIDKAKAKDRKAKEKALLKDAFSADPETTEEELERRRQKLKTLIKLGKDRGYLTFAEI
NDHLPENVFDPEAIEGIIGTFNDMGVAVYERAPDAEALLLSDNVVTVTSDDDEVEAAAEA
ALSTVDSDFGRTTDPVRMYMREMGTVELLTREGEIVIAKKIEEGLKDMIQAISACPTTIA
EILTAAERIANDEIKIDDIVDGLVDPNAVEEVIVKPVVVVAEVSEEDEEEEEEEEEEDDE
GVEDAAGVSAEQLAQMRRDALAKFDIISVNFDKMRKAFEKEGYNSKTYVKAQEAISNELL
GIRFTAKVVEKLCDTLRGQVDEVRHVEKQILDVAVNRCNMPRAHFIKVFPGNETNLNWVV
AEVNAGHSYSAILGRNVPTVQQLQQKLIDLQVRVVLPLPDLRSINKKMSAGEMKARRAKR
EMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKI
MKIAKEPISMETPIGDDDDSHLGDFIEDNHTLAPADAALHASMRNVVKDVLDSLTPREAK
VLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacccgcacaaaaactggcatctgtaaaggctccggtgacagcaaaaaatgct
gctatcaagcctgcaagcaaggcaattccgaaatcttccgcagctacggcggttggcaaa
ctagtcgaaaaaaagacgccggcgacaggcgcagtgaagtcgtccccgcttaaatcagct
gctaaaaaagaacttgcgaaagatgttaaagcgcctaaagtgataaagacagcggtggcg
cagccgctagctaaagtcgcaagcaagccagtgaaagcggcaagtagggttagtcaggaa
ccgaaaccagtttccaaattagttaagccaactggtaaggaaatacaaggcaagaatgca
aagccagcgcaagagcttaccgctcctaattcaggcaggcaaacaggtaaaaatgcagac
aagccacaaactgcaccattgaaagcttctgtgacaattaacaaaaccgactcaaagacc
gtgatcaagccaaccaagagttcagccaaggctgaaaaaacaccagaagtgcaagagatt
aagaccggttctgctccaactgtgagccagactaccgatgctgcagtgttggccgcgatt
gacacttctggctatattttgcccggtgtgaaagtgccaggtcgccgcggtcgcaagcct
aaagaatatcagcctgaaaatgaagaaatggccgcgttgaatgcagttgagcgcgcggaa
atgaaggcgattgataaggctaaagcaaaagatcgcaaagctaaagagaaggccttgctt
aaagatgcattttcagccgatcctgagaccacagaagaagaattagaacggcgtcgtcaa
aagctcaagaccctgattaaattgggtaaagatcgcggctatctgacctttgccgaaatt
aacgatcatttgccggaaaacgtttttgatccagaggcgatcgaaggcatcattggtact
ttcaatgatatgggcgttgccgtgtatgagcgtgcgccggatgccgaagctctgctctta
tctgacaatgtcgttacggttaccagtgatgatgatgaggttgaggccgctgccgaagct
gccttgtctacagttgattctgattttggtcgcaccactgaccctgtgcgcatgtatatg
cgcgaaatgggaacagtagagttgttgacgcgcgaaggcgaaatcgttatcgcgaagaaa
attgaagaaggtctgaaggacatgatacaggcgatctctgcctgtcctactaccatcgct
gaaatcctcacggcggctgagcgtattgcgaatgacgaaatcaagattgacgatatcgtc
gatggcttagtcgatccgaatgcggttgaagaagtcatcgttaagccggtcgtggtagtc
gctgaagtgagcgaggaagacgaagaggaagaggaagaggaagaggaagaagatgacgag
ggtgtcgaagacgctgccggtgtctcggctgagcaattggctcaaatgcggcgcgatgct
ctggctaaattcgatattatttctgttaattttgacaaaatgcgtaaggcctttgaaaaa
gaaggctataactcgaaaacttacgttaaggcgcaagaggcgatttccaatgagcttttg
ggaatacgttttactgccaaagtcgtagagaaattatgtgacaccttgcgcggtcaggtt
gatgaagtgcgtcacgtagagaagcaaatccttgatgtcgcggtgaatcgttgcaatatg
ccacgcgcgcattttatcaaggtctttcctgggaacgaaaccaatctcaattgggtcgtt
gccgaggtcaatgccgggcattcctatagtgcgatactcggtcgcaatgtgccgactgtc
cagcaattacagcaaaagctcatagacttgcaagtgcgggtagtgttgcctttgccagat
ctgcgcagcatcaataaaaagatgtcagctggcgaaatgaaggcacgtcgagctaagcgt
gaaatgactgaggccaatttgcgtctggttatttccatcgcgaaaaaatacactaaccgc
ggtttgcaatttcttgatttgattcaagagggtaatatcggtttgatgaaggcggtcgat
aagtttgaatatcgccgcggctataaattctcgacttatgccacatggtggatacgccag
gcgatcacgcgttcgatcgcggatcaggcacgtaccatacgtattcctgtgcatatgata
gaaaccatcaataagatgaatcgtatctcgcgccaaattttgcaagagacaggtgctgag
cctgatcctgcaaccttggcgatcaagatggaaatgccagaagagaagatacgcaaaatc
atgaagatcgccaaagagccgatctccatggaaacgcctatcggtgatgacgatgattcc
cacttgggtgatttcattgaagataaccacactttggcaccagctgacgccgccttgcat
gcctctatgcgcaatgttgtgaaagacgttttggattcactgacgccgcgcgaagcaaaa
gtattgcgtatgcgtttcggcgttgaaatgtctaccgatcatactttagaggaagtcggt
aagcagtttgatgtgacgcgtgagcgcatccgtcaaatagaggctaaggcattgcgtaag
ctgcgccatccatcacgttcggataagttgaagagcttcctcgaaggtaattaa
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