Variovorax sp. PAMC 28711: AX767_12290 Help Entry AX767_12290       CDS       T04325                                  Name (GenBank) RNA polymerase factor sigma-54   KO K03092   RNA polymerase sigma-54 factor Organism vaa  Variovorax sp. PAMC 28711 Pathway vaa02020   Two-component system vaa02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:vaa00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     AX767_12290  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     AX767_12290  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:vaa03021]     AX767_12290 Transcription machinery [BR:vaa03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      AX767_12290 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_IclR HTH_23 DUF826 Motif Other DBs NCBI-ProteinID:  AMM25054 UniProt:  A0A126ZEP6 LinkDB All DBs Position 2512185..2513783 Genome browser AA seq 532 aa AA seqDB search MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDDNPFLERTAEEAAREEFG LDTSDTPAPREDDRDADFSGSTASTSSDDTPSSASSETESPVADVADREPDWEGDGTVEL TPDDGEWGGDAQASGNNLGPNDGSERIDATELARSQESLQSFLHRQALSLRLNANDQAAL RFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGARDLG ECLAIQLRALAPANAARESENARQVRKTALLICKQPMELLARRDFKRLATLTRSNEEEVR SALQMIARLEPKPGRRFVDVERNIVVPDVIVTRTGRGATLKFRVMLNPDVMPRLRVHDIY AGALKAHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSFFVHGELAMRP LVLREIADELGLHESTISRVTTAKYMATPYGTVELKYFFGSALGTETGGNASSTAVRALI KQFVTAEDIKKPLSDSQVSEMLKEQGIECARRTVAKYREALRIAPANLRKAL NT seq 1599 nt NT seq  +upstreamnt  +downstreamnt atgaagcaaggcctgtcgctgcgcgtttcgcagcacttggcgctcacgccccaacttcaa cagtcgatccggctgctgcagctttccacgctcgagctgagccaggaagtcgagcagatg cttgacgacaacccttttctcgaacgcactgccgaagaagcggcgcgcgaggagttcggg ctcgacacgtccgacacgccggcgcctcgcgaagacgaccgcgacgccgatttttccggg agcaccgccagcacgtcgtccgacgacacgccttcttccgccagcagcgagaccgagtcg ccggtcgccgatgtggccgaccgcgagcccgactgggaaggcgacggcaccgtcgagctg acgcccgacgacggcgaatggggcggcgacgcgcaggccagcggcaacaacctcggcccc aacgacggcagcgagcgcatcgacgccaccgagttggcccgcagccaggaatcgctgcaa tcgttcctgcaccgccaggcgctgagcctgcggctcaatgccaacgaccaggccgcgctg cgcttcctgatcgaatcgctgaacgacgacggctacctcgaagactcgctgccggcgctg gcctcggggctcgcgggcgacgacaacgaccagttcgacgatctggttcatcatttccag gtcgcgctcggcctgctgcaaagcctggagccggtcggggtcggcgcacgcgacctcggc gagtgcctggcgatccagcttcgcgcgctggcacctgcgaacgcggcccgcgaaagcgaa aatgcccggcaggtccgcaagaccgccctcctgatctgcaagcagccaatggagctgctc gcgcgccgcgacttcaaacgcctcgccacgctcacccgcagcaacgaggaagaggtgcgc agcgcattgcagatgatcgcgcggctcgagcccaagccgggtcgtcgcttcgtcgatgtc gaacgcaacatcgtggtgcccgacgtgatcgtcacgcgcaccggccgcggcgccacgctc aagttccgcgtgatgctcaaccccgacgtgatgccgcggctgcgcgtgcacgacatctac gccggcgcgctcaaggcgcacaagggcgagggcagccaggcgctgtcgcagcggctgcag gaagcgcgctggttcatcaagaacatccagcagcgcttcgacaccattcttcgcgtgtcc aacgccatcgtcgagcgtcagaaaagcttcttcgtgcacggcgaactcgccatgcgcccg ctggtgctgcgcgagatcgccgacgagctggggctgcacgagtcgaccatcagccgcgtg acgaccgccaagtacatggcgacgccttacggcacggtggagctcaaatatttcttcggt tcggcgctcggcaccgagaccggcggcaacgcgtcgagcacggccgtgcgggcgctcatc aagcagttcgtcacggccgaagacatcaagaagccgttgtcggacagtcaggtgtcggag atgctgaaagagcagggcatcgagtgcgcacgtcgcacggtcgccaaataccgcgaggcg ctgcgcatcgcgccggccaatctgcgcaaggcgctgtag

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