KEGG   Verticillium alfalfae: VDBG_01955
Entry
VDBG_01955        CDS       T02227                                 
Name
(RefSeq) RH73529p
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
val03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDBG_01955
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_01955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_01955
   03041 Spliceosome [BR:val03041]
    VDBG_01955
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VDBG_01955
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VDBG_01955
Spliceosome [BR:val03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    VDBG_01955
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 9535395
NCBI-ProteinID: XP_003007767
UniProt: C9SBW2
LinkDB
AA seq 141 aa
MADRGSHRGGGGGGGGRGGGHRGRGGGGGGGRGGHGGGQGGAGGDRERPKKENILDLGKY
MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENTRSLGLVVARGTLLV
LVSPVDGSEPIANPFAQPEED
NT seq 426 nt   +upstreamnt  +downstreamnt
atggctgacagaggctcgcatcgtggaggaggaggaggaggcggcggtcgtggaggaggt
catcgaggaaggggaggcggcggcggcggaggtcgtggcggacacggtggaggccagggt
ggtgctggcggcgaccgcgagaggcccaagaaggagaacatccttgacttgggcaagtac
atggacaagaagatcaccgtcaagttcaatggcggtcgcgaagtgactggcacactcaag
ggatacgacgctctgatgaatctcgtgctcgatgacgtcgaagaagtcatgagagatgat
gagggaaaggagaacacccgatctcttggcctcgtcgtggcacgcggtacactcttggtc
ctcgtcagccctgtcgacggaagcgagccgatcgccaaccctttcgcccagccagaagaa
gattga

DBGET integrated database retrieval system