KEGG   Verticillium alfalfae: VDBG_06667
Entry
VDBG_06667        CDS       T02227                                 
Name
(RefSeq) DNA ligase
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
val  Verticillium alfalfae
Pathway
val03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    VDBG_06667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_06667
Enzymes [BR:val01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VDBG_06667
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     VDBG_06667
SSDB
Motif
Pfam: DNA_ligase_A_N DNA_ligase_A_M BRCT_2 DNA_ligase_A_C BRCT RNA_ligase DNA_ligase_IV BcrAD_BadFG mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 9537149
NCBI-ProteinID: XP_003003105
UniProt: C9SP42
LinkDB
AA seq 944 aa
MSHREGQPSPSAAAIGEDERQYAVGGMTSQEVNENYPGRPRNHSETFLFSELFKSLFNPL
MENKKQPPGSGPPRAKLGPHGPSKPSPSEQRRHIIDRFISRWRKNVGHDFYPAMRLILPD
KDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGYNLLHWKLPGQTTASRMAGDFAGRAFEV
LSKRPMRIEVGDMTIADVNELLDKLAGSSGELENLEVFETFYERMNAEELMWLIRIILKQ
MKVGATEKTLLHLWHPDAETLFNVSSSLRRVCWELFDPQVRLEQENTGVTLMQCFQPQLA
QFQMPASFQKMVDYLRPPRGSRGLKDDRGAWTRHLGKAFAAGVRNIILDGEMITWDPDTD
KIMQFGTLKTAALAEQKNPYNNTGPRPLFRVFDILYLNDQPLTRYTLRDRYNALRKAVIG
VHRRIEVHEHEAATSADAIEPLLRKVVAEASEGLVLKNPRSMYRLNSRNDDWLKVKPEYM
TEFGESLDCVVIGGYYGSGKRGGILSTYLCGLRVSENHIKAGANPEKCFSLFKVGGGFSV
EDYAEIRHHTDGKWKDWDPKKPPNEYIELAHGFAEKPDVWIRPKDSFVLEAKASSVGPSD
QFALGFTLRFPRFRKLRKDKSWDQGLSVQEFQDLRRRVEEEAQEKTMSVENTKRRAVKRV
KKELVIAGTDSTPVQFEGEKSKVFEGLEFCVLSESLKPFKKTKTQLETTIKANGGRITQR
HAARSDLILIADKRVVSVASLIKKGDVDIIRPNWVQDCLAQETDDGLLPYEERHLFHATE
GLREIARQNTDEFGDSYFRIVDVEELRQILVDMSPHEKSEERDEDAAEFARQLKERGNDL
GERDSAVFGRCVVHLHVLPGGELDAFRLRNYIAFGGGEVTDGLPVDSSTHIMLVGGRDAE
KQDAAVSVRKDIGNRQKIPRVVASQWVEDSWKERTMLDEERYRV
NT seq 2835 nt   +upstreamnt  +downstreamnt
atgagccaccgagaaggacaaccgtcgccgagcgcggccgccatcggtgaagatgagcgc
cagtacgcggtcggtggtatgacctcgcaagaggtcaacgagaactaccctggtcgccca
aggaatcactccgagacattcctcttctcggagctctttaagagcctcttcaaccccttg
atggagaacaagaagcagccccccggctcgggcccgccccgcgccaaactcgggccccat
ggcccttccaagccgtcgccgagcgagcagcgccgccacatcatcgaccggttcatctcg
cgatggcgaaagaatgtcggccacgatttttacccggccatgcgattgatcctgcccgac
aaggaccgtgacaggggcgtctatggcctcaaggagaacgccattggcaagctcctcgtc
aagctcatgaagattgacaagaactccgaggacggctacaacctcctgcactggaagctg
cccggccaaaccacggcgtcgcgaatggccggcgactttgcgggtcgagcctttgaggtc
ttgtcgaagcgtcccatgcgcatcgaagtgggtgacatgacgattgccgacgtcaatgag
ctgctcgacaagctggccgggtcctcgggagagctggagaacctcgaagtgtttgagacg
ttctacgagcgcatgaacgccgaagagctcatgtggctgatccgcatcatcctgaagcag
atgaaggttggcgccacggaaaagacgttgcttcatctctggcaccccgacgccgagact
ttgttcaacgtgtcgtccagcctgcggcgcgtgtgctgggaactgttcgacccacaggtc
cggctggagcaggagaacacgggcgtcaccctcatgcaatgcttccagccacaattagcg
cagtttcagatgccggcatcgttccagaagatggtcgactacctgcgcccaccgagagga
tcccgaggcctcaaggacgatcgcggcgcgtggacgcgacacctcggcaaggcctttgcc
gctggcgtgcgaaacatcatcttggacggcgagatgatcacctgggacccggacaccgac
aagatcatgcagtttggcaccttgaagacggcagcgctggctgaacagaagaacccctac
aacaacactggcccccgcccgctcttccgcgtctttgacatcttgtacctgaatgaccag
ccgttgacgcgatacaccctccgcgatcgctacaatgcgctgaggaaagctgttattggt
gtacacagaaggatagaggtacacgagcacgaggccgcgacatcggcagatgccatcgag
ccactccttcgcaaagtcgtcgccgaggcctcggaaggcttggtcctcaagaacccgcgc
tccatgtaccgcctcaacagccggaacgacgattggctcaaagtgaagcccgagtacatg
acagagtttggcgaatcgctcgattgtgtcgtgattggcggctactacggctcggggaag
cgaggcggcattctctccacgtacttgtgcggcctgcgcgtcagcgagaaccacatcaaa
gcgggagccaaccccgagaagtgcttcagtcttttcaaagttggcggcggcttcagcgtg
gaggactatgccgagattcgtcatcacaccgacggcaagtggaaggactgggatcccaag
aagccgccgaacgagtacattgaattagcacacggctttgccgagaaaccagatgtctgg
atcaggccaaaggactcatttgtcctcgaagcaaaggcctccagcgtcggcccatccgat
caatttgccctgggcttcacgctgcgattccccaggtttcgcaagctccgaaaagacaag
agctgggatcagggcctcagcgtgcaggaattccaggacctgcgtcgacgtgtcgaagag
gaggctcaggagaagacaatgagcgtggagaacacaaagcgcagagctgtcaagcgtgtc
aagaaggaacttgtcattgctggcaccgacagcacacctgttcagtttgagggcgagaag
tcaaaggtcttcgaggggctggaattctgcgtcctgtccgaatccctcaagccattcaag
aagaccaagacacagctggagacaacgatcaaagcaaacggcggtcgcatcacgcagcga
cacgccgcgcggtcagacctgatccttatcgcggacaagcgggtcgtcagcgtcgccagt
ctcatcaagaagggcgacgtggacatcatccggcccaattgggttcaagattgtctcgca
caagaaaccgacgacggtcttctgccctacgaagaacgccatttgttccacgcaacagag
ggcctgcgagagattgctaggcagaacacagacgagtttggtgacagctacttccggatt
gtagacgtggaggagctgcggcagattctggttgacatgtctccgcacgagaagagtgaa
gagcgcgacgaggacgcggccgagtttgcacgccagctcaaggagagggggaacgacttg
ggcgaacgggatagtgccgtctttggtcgttgtgtcgttcaccttcatgttctacccggt
ggggagctcgacgcgtttcgcttgcggaactacattgccttcggcggcggggaggttacc
gatggcttgcccgttgattcatccacgcacattatgctcgtcggagggcgagatgcagag
aaacaggatgcggccgtttcggtgcgcaaggacatcggcaaccggcagaagataccccgc
gttgttgcttcacaatgggtagaggactcgtggaaggagaggacgatgctcgacgaggag
cgatacagggtataa

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