Verticillium alfalfae: VDBG_06667
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Entry
VDBG_06667 CDS
T02227
Name
(RefSeq) DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
val
Verticillium alfalfae
Pathway
val03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VDBG_06667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_06667
Enzymes [BR:
val01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VDBG_06667
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
VDBG_06667
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
BcrAD_BadFG
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
9537149
NCBI-ProteinID:
XP_003003105
UniProt:
C9SP42
LinkDB
All DBs
AA seq
944 aa
AA seq
DB search
MSHREGQPSPSAAAIGEDERQYAVGGMTSQEVNENYPGRPRNHSETFLFSELFKSLFNPL
MENKKQPPGSGPPRAKLGPHGPSKPSPSEQRRHIIDRFISRWRKNVGHDFYPAMRLILPD
KDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGYNLLHWKLPGQTTASRMAGDFAGRAFEV
LSKRPMRIEVGDMTIADVNELLDKLAGSSGELENLEVFETFYERMNAEELMWLIRIILKQ
MKVGATEKTLLHLWHPDAETLFNVSSSLRRVCWELFDPQVRLEQENTGVTLMQCFQPQLA
QFQMPASFQKMVDYLRPPRGSRGLKDDRGAWTRHLGKAFAAGVRNIILDGEMITWDPDTD
KIMQFGTLKTAALAEQKNPYNNTGPRPLFRVFDILYLNDQPLTRYTLRDRYNALRKAVIG
VHRRIEVHEHEAATSADAIEPLLRKVVAEASEGLVLKNPRSMYRLNSRNDDWLKVKPEYM
TEFGESLDCVVIGGYYGSGKRGGILSTYLCGLRVSENHIKAGANPEKCFSLFKVGGGFSV
EDYAEIRHHTDGKWKDWDPKKPPNEYIELAHGFAEKPDVWIRPKDSFVLEAKASSVGPSD
QFALGFTLRFPRFRKLRKDKSWDQGLSVQEFQDLRRRVEEEAQEKTMSVENTKRRAVKRV
KKELVIAGTDSTPVQFEGEKSKVFEGLEFCVLSESLKPFKKTKTQLETTIKANGGRITQR
HAARSDLILIADKRVVSVASLIKKGDVDIIRPNWVQDCLAQETDDGLLPYEERHLFHATE
GLREIARQNTDEFGDSYFRIVDVEELRQILVDMSPHEKSEERDEDAAEFARQLKERGNDL
GERDSAVFGRCVVHLHVLPGGELDAFRLRNYIAFGGGEVTDGLPVDSSTHIMLVGGRDAE
KQDAAVSVRKDIGNRQKIPRVVASQWVEDSWKERTMLDEERYRV
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccgagaaggacaaccgtcgccgagcgcggccgccatcggtgaagatgagcgc
cagtacgcggtcggtggtatgacctcgcaagaggtcaacgagaactaccctggtcgccca
aggaatcactccgagacattcctcttctcggagctctttaagagcctcttcaaccccttg
atggagaacaagaagcagccccccggctcgggcccgccccgcgccaaactcgggccccat
ggcccttccaagccgtcgccgagcgagcagcgccgccacatcatcgaccggttcatctcg
cgatggcgaaagaatgtcggccacgatttttacccggccatgcgattgatcctgcccgac
aaggaccgtgacaggggcgtctatggcctcaaggagaacgccattggcaagctcctcgtc
aagctcatgaagattgacaagaactccgaggacggctacaacctcctgcactggaagctg
cccggccaaaccacggcgtcgcgaatggccggcgactttgcgggtcgagcctttgaggtc
ttgtcgaagcgtcccatgcgcatcgaagtgggtgacatgacgattgccgacgtcaatgag
ctgctcgacaagctggccgggtcctcgggagagctggagaacctcgaagtgtttgagacg
ttctacgagcgcatgaacgccgaagagctcatgtggctgatccgcatcatcctgaagcag
atgaaggttggcgccacggaaaagacgttgcttcatctctggcaccccgacgccgagact
ttgttcaacgtgtcgtccagcctgcggcgcgtgtgctgggaactgttcgacccacaggtc
cggctggagcaggagaacacgggcgtcaccctcatgcaatgcttccagccacaattagcg
cagtttcagatgccggcatcgttccagaagatggtcgactacctgcgcccaccgagagga
tcccgaggcctcaaggacgatcgcggcgcgtggacgcgacacctcggcaaggcctttgcc
gctggcgtgcgaaacatcatcttggacggcgagatgatcacctgggacccggacaccgac
aagatcatgcagtttggcaccttgaagacggcagcgctggctgaacagaagaacccctac
aacaacactggcccccgcccgctcttccgcgtctttgacatcttgtacctgaatgaccag
ccgttgacgcgatacaccctccgcgatcgctacaatgcgctgaggaaagctgttattggt
gtacacagaaggatagaggtacacgagcacgaggccgcgacatcggcagatgccatcgag
ccactccttcgcaaagtcgtcgccgaggcctcggaaggcttggtcctcaagaacccgcgc
tccatgtaccgcctcaacagccggaacgacgattggctcaaagtgaagcccgagtacatg
acagagtttggcgaatcgctcgattgtgtcgtgattggcggctactacggctcggggaag
cgaggcggcattctctccacgtacttgtgcggcctgcgcgtcagcgagaaccacatcaaa
gcgggagccaaccccgagaagtgcttcagtcttttcaaagttggcggcggcttcagcgtg
gaggactatgccgagattcgtcatcacaccgacggcaagtggaaggactgggatcccaag
aagccgccgaacgagtacattgaattagcacacggctttgccgagaaaccagatgtctgg
atcaggccaaaggactcatttgtcctcgaagcaaaggcctccagcgtcggcccatccgat
caatttgccctgggcttcacgctgcgattccccaggtttcgcaagctccgaaaagacaag
agctgggatcagggcctcagcgtgcaggaattccaggacctgcgtcgacgtgtcgaagag
gaggctcaggagaagacaatgagcgtggagaacacaaagcgcagagctgtcaagcgtgtc
aagaaggaacttgtcattgctggcaccgacagcacacctgttcagtttgagggcgagaag
tcaaaggtcttcgaggggctggaattctgcgtcctgtccgaatccctcaagccattcaag
aagaccaagacacagctggagacaacgatcaaagcaaacggcggtcgcatcacgcagcga
cacgccgcgcggtcagacctgatccttatcgcggacaagcgggtcgtcagcgtcgccagt
ctcatcaagaagggcgacgtggacatcatccggcccaattgggttcaagattgtctcgca
caagaaaccgacgacggtcttctgccctacgaagaacgccatttgttccacgcaacagag
ggcctgcgagagattgctaggcagaacacagacgagtttggtgacagctacttccggatt
gtagacgtggaggagctgcggcagattctggttgacatgtctccgcacgagaagagtgaa
gagcgcgacgaggacgcggccgagtttgcacgccagctcaaggagagggggaacgacttg
ggcgaacgggatagtgccgtctttggtcgttgtgtcgttcaccttcatgttctacccggt
ggggagctcgacgcgtttcgcttgcggaactacattgccttcggcggcggggaggttacc
gatggcttgcccgttgattcatccacgcacattatgctcgtcggagggcgagatgcagag
aaacaggatgcggccgtttcggtgcgcaaggacatcggcaaccggcagaagataccccgc
gttgttgcttcacaatgggtagaggactcgtggaaggagaggacgatgctcgacgaggag
cgatacagggtataa
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integrated database retrieval system