Verticillium alfalfae: VDBG_07293
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Entry
VDBG_07293 CDS
T02227
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
val
Verticillium alfalfae
Pathway
val03082
ATP-dependent chromatin remodeling
val03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
VDBG_07293
03083 Polycomb repressive complex
VDBG_07293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_07293
Enzymes [BR:
val01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
VDBG_07293
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
VDBG_07293
HDAC complexes
Sin3A-HDAC complex
VDBG_07293
BRAF-HDAC complex
VDBG_07293
REST complex
VDBG_07293
SHIP complex
VDBG_07293
MiDAC complex
VDBG_07293
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
VDBG_07293
Heterochromatin formation proteins
Other heterochromatin formation proteins
VDBG_07293
Chromatin remodeling factors
NuRD complex
VDBG_07293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
9527729
NCBI-ProteinID:
XP_003002722
UniProt:
C9SQQ8
LinkDB
All DBs
AA seq
587 aa
AA seq
DB search
MRPHRNAGDTNRLLPDSGARLHTDAVRYLVSVQPWQNKAKQQAKAYDDQADTTSTSAIPS
PSLSHTWAEPSISLAIGQPHLAHWTATHRIEYLLPTNPEDLDALSQRASFNTALIPPNEG
IIELLRFMKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGELRDIGIGPG
KYYSVNFPLRDGINDQSYKSIFEPVIEHVMKFYQPEAVVLQCGGDSLSGDRLGCFNLSME
GHANCVSYVKSFGLPTLVLGGGGYTMRNVARTWAFETGVLVGQHMERQLPYNEYYEYYAP
DFDLDVRPSNMENSNSTEYLEKVKAALIDNLRHTAPAPSVQMQDVPRQPFGGMTEEEEAE
LNDLDEDENADTRMTQDRWDKRVQNDAEFEESEDEDMDAANGMTRPRGAKKRAFNDFSKG
EEEANSTAPTPVNGTSAEETADAEPIEDADVTIEKPAEEDEPVEKEAAAEKEATPKEDQP
AVDGDGDVGMDDRADAAETTTIKKEDVEPEATTETEQTSKPASRKATPEKAPAPAAEEPA
KETESKTEPETAAPEAEKTDEAPKEDEAADKMDVDEEPAKESKAGES
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaggccacaccgaaacgcaggcgacactaatcgcctcttgcctgactctggcgctagg
ctccatacagacgctgttcgatatcttgttagcgtacagccctggcagaacaaagccaaa
caacaggccaaagcctatgatgaccaagccgacacgactagtaccagtgccattcccagc
cccagtctgagccacacctgggccgagccttccatttccctggccattggccagcctcat
ctggcccactggacggctacgcatcgcatcgaatacctgctaccaacaaacccagaagac
ctcgatgctctctcgcagcgagcttccttcaatactgccctgatacccccaaacgagggc
atcatcgagctcctgcgtttcatgaagcgcgttttatacatcgacattgatgttcaccac
ggtgatggtgtcgaggaggccttttacaccaccgaccgcgttatgacggtctccttccac
aagtacggcgagtacttccccggcaccggcgagctccgcgacatcggtatcggcccaggc
aaatactactcggtcaacttccccctgcgagacggcatcaacgatcagtcgtacaagtcg
atcttcgagcctgtcatcgagcacgtcatgaagttctaccagcccgaggctgttgtcctt
cagtgcggtggcgacagtctttccggcgatcgtttgggttgcttcaatctcagcatggag
gggcatgccaactgcgtctcgtacgtcaagagtttcggccttcctaccctggttctcggc
ggcggtggctacaccatgcgcaacgttgcccgcacgtgggcctttgagaccggtgtgctg
gttggtcagcacatggagcgccagctcccgtacaatgaatattacgaatactacgctccc
gatttcgatctcgatgttcggccttccaacatggagaactccaatagcacagagtatctc
gagaaggtcaaggccgccctcatcgataacctccgacacacagcccccgctccctctgtc
cagatgcaagatgtgccccgtcaaccctttggcggcatgacggaagaagaggaggctgaa
ctcaacgatctggacgaggatgagaacgctgatacccggatgacccaagatcgttgggac
aagcgcgtgcagaacgacgccgaatttgaagagagcgaagacgaagacatggacgccgcc
aacggcatgacgcggcctcgtggagcgaagaagcgcgccttcaacgacttttcaaagggc
gaggaggaggccaacagcaccgccccgacccctgtcaacgggacgagtgccgaggaaact
gctgatgctgaacccattgaggatgccgatgtcaccattgaaaagcccgccgaagaggat
gaacctgtggaaaaagaggcagctgccgagaaggaggcgacgccaaaagaggaccagcca
gcagtggacggagacggtgatgtcggcatggacgacagggccgatgctgcagaaacgacc
acgatcaagaaggaggatgtcgagcctgaggcgaccacggagacagaacagaccagcaag
ccggcgtcacgcaaggccacgcccgaaaaagctcctgctcctgccgccgaggagcccgcc
aaggagaccgaatccaagactgaacccgagacggctgcacccgaggccgagaagacagac
gaagcgcccaaggaggacgaggcggccgacaagatggacgtggacgaggagcccgccaag
gaatccaaggccggcgagtcgtag
DBGET
integrated database retrieval system
