Variovorax sp. PMC12: C4F17_09855
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Entry
C4F17_09855 CDS
T05380
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_09855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_09855
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4F17_09855
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4F17_09855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVQ81223
UniProt:
A0A2P1V7Q9
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All DBs
Position
1:2105158..2106960
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AA seq
600 aa
AA seq
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MNFDELKLAPAILKAVHEHGYDSPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML
HKLSMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ
ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ
EIERFTKQTIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTEM
LQRIRENKAGQGGGNGAGGGNGGGQRRGGGQGQGGGQARNANGGGQGQGPRGPGARAPQG
RGPQGPARAPHHAPHQHQQAHQPHDERQPRHHGNSHSPTQANQVAHLRAEAVAGGAGQPD
PLRTSVDHMGGGRGRGRPGGGGGGYGGNRSGGGGRSGGGGGGYGGGGGRSGGGGGRSFGR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgacgaactgaagctggcccccgccatcttgaaggctgtgcacgagcacggc
tacgactcgcccacccccatccaggcgcaagccatccccgcggtgctcgaaggtcatgac
ctgctgggcggcgcacagaccggcaccggcaagaccgccgccttcacgctgccgatgctg
cacaagctcagcatgagccgcagcgccaccaacaagttcggcggcgtcggcatccgcgcc
ctcgtgctgacccccacccgcgaactcgcggcccaggtcgaagagtcggtgcgcacgtac
ggcaagtacctgcagctcgactcgaccgtgatcttcggcggcgtcggcatgaacccgcag
atcagcaagctcaagaagggcgtcgacatcctcgtggccacccccggccgcctgctcgac
ctgcagcagcagggcatgctcgacctgagccaggtccagatgctgatcctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaagatcctggccctggtgccc
aaggaaaagcagagcctgcttttctcggccaccttcagcgacgagatccgcgacctggcc
gccacgctgctgaagaacccgcagagcatccaggtcacgccgcgcaacaccaccgtgcag
cgcatcacccaggtgatccaccccgtgggccgcggcaagaagaaggcgctgctcgcgcac
atcatcaacgagaacaagtggagccaggtgctcgtgttcacgcgcaccaagttcggcgcc
aacagcgtggccgaattcctcaccaagaacggcatcgaggcgatggcgctgcacggcaac
aagagccagagcgcccgcacgcaggcgctggccggcttcaagagcggcgacatccgcgcg
ctggtggccaccgacatcgcggctcgcggcatcgacatcgacgagctgccgcacgtggtg
aactacgagatcccgaacgtcagcgaagactacgtccaccgcatcggccgcaccggccgc
gccggttcgagcggcgaggccgtgagcttcgtgtgcctggacgaagaaggcttcatgcag
gaaatcgaacgcttcaccaagcagacgattcccgtgcagatcgtcgagggcttcggccct
gaggaaggcgagcgcgccgagcccatcgccatgggccgccagacgatctggggcggcgcc
ggccgtccgccgagccgcgatgtgatgcaggcagccgccaaggccgcccgcaccgagatg
ctgcaacgcatccgcgagaacaaggccggccagggtggcggcaacggcgctggcggcggc
aacggcggcggtcagcgccgcggcggcggccagggccagggcggcggccaggcccgcaat
gccaacggcggcggacaaggccagggcccgcgcggcccgggtgcccgcgcaccgcaaggc
cgcggcccgcaaggtccggcacgcgcaccgcaccatgcaccgcatcagcatcagcaagcc
catcagccgcatgacgagcgccagccgcgccatcacggcaacagccacagcccgacgcaa
gccaaccaggtcgcgcacctgcgtgccgaagcggtcgctggcggcgcaggccagccggat
ccgttgcgcaccagcgtcgaccacatgggtggcggccgcggacgcggtcgtccgggcggc
ggcggcggtggctacggcggcaaccgttcgggcggcggtggccgctcgggtggcggcggt
ggtggctatggcggcggtggcggccgctccggtggcggcggtggccgttccttcggccgc
tga
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