KEGG   Variovorax sp. PMC12: C4F17_17340
Entry
C4F17_17340       CDS       T05380                                 
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00550  Peptidoglycan biosynthesis
vam01100  Metabolic pathways
vam01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:vam00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    C4F17_17340 (mrdA)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    C4F17_17340 (mrdA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:vam01011]
    C4F17_17340 (mrdA)
Enzymes [BR:vam01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     C4F17_17340 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:vam01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   C4F17_17340 (mrdA)
SSDB
Motif
Pfam: Transpeptidase PBP_dimer
Other DBs
NCBI-ProteinID: AVQ82575
UniProt: A0A2P1VBM2
LinkDB
Position
1:complement(3751807..3753780)
AA seq 657 aa
MTEIRNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVP
VVPNRGLILDRNGIVLASNYSAYTLEITPSKVNDVEETIDSLTQVLEVSPRDRRRFKRLR
EDSRSFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRIN
QREKTAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLAS
HPATPGNTVMLSLDIKLQKLIEDMYGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGI
DNESWAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFG
GHRFGSPEGNLGGVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGE
VRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHK
PHLVLATRNTVSGQVVPMPQPPAENLGYTASAISVIREGLTSVVTSGTARGVFAGAAYQA
AGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGAGAA
APIARRVFDYWLANQYPSEADLAAIKIGKATAPIGKPRVASEVAWPAAATTTPATAP
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgaccgaaatccgcaacgtcgccgccgacctcgcgcgcttcaagcgccgggtgatcgtc
atcgggctggcggtgctgttcgccttcgggctgctgtgcgcgcggctggtgtacctgcag
gtcacgcgccacgaagacctggccgagcaggccgagagcaaccgcacggcggtggtgccg
gtggtgccgaaccggggcctgatcctcgaccgcaacggcatcgtgctggcctccaactat
tcggcctacacgctggagatcacgccttccaaggtcaacgacgtcgaggaaaccatcgac
agcctgacccaggtgctcgaagtgtcgccacgcgaccgccgccgcttcaagcgcctgcgc
gaagactcgcgcagcttcgattccatccccatccgcacccgcctgagcgatgaagaggtg
gcgcgcttcgcggcccagcgctaccgcttcccgggcgtggaaatcaaggcgcggctgttc
cgcaactacccgcagggcgagctggcctcgcacgtgctcggctacatcggccgcatcaac
cagcgcgagaagaccgcgatggaagactgggacgaggaagagcaggccaactacaagggc
accgactacatcggcaagctcggcatcgagcagagctacgaaaagacgctgcacggccag
accggcgtcgagcagatggaaacctccgccggcgggcgcgccgtgcgccgcctggccagc
catccggccacgccgggcaacaccgtgatgctgtcgctcgacatcaagctgcagaagctc
atcgaggacatgtacggcgaccgccgcggcgcggtggtggccatcgaccccaagaccggc
gaggtgctggccttcgtgagcaagcccaccttcgaccccaacctgttcgtcgaaggcatc
gacaacgagagctgggcggcgctcaccgaatccatcgacaagccgctgctgaaccgcgcg
ctgcgcggcacctacccgcccggctccacctacaagcccttcatggcgctggcggcgctg
cagaccggcaagcgcggtcccagcgtggtggtgaacgaccccggctacttcaacttcggc
ggccaccgcttcggcagccccgaaggcaacctgggcggcgtcgacatgcgccgcgctatc
cagctgtcgagcaacatctatttctactcgctggccaacgagatgggcgtggacctgatc
cacgactccatgaagccgctgggcttcggccagatcaccggcatcgacctgggcggcgaa
gtgcgcggcgtgctgccgagcaccgagtggaagcgcaacgcctacaagcgccccgaggcc
aagaagtggtatgcgggcgagaccatctcgctgggtatcgggcagggctacaacaacttc
acgatgctgcagctggcgcaggccacggccatcgtggcggacggcggtctcaagcacaag
ccgcacctcgtgctggccacgcgcaacaccgtgagcgggcaggtggtgccgatgccgcag
ccgccggcggaaaacctcggctacacggcgtcggccatctcggtgatccgcgagggcctg
accagcgtggtcaccagcggcacggcgcgcggcgtgttcgcgggcgcggcctaccaggcg
gcgggcaagacgggcactgcgcaggccgtgacgcaggcccagaacaccaagtacaacgcc
cgcgcgctcgaagagcaccagcgggaccacgcgctgttcatgggcttcgcgccggtgaac
gacccgaagatcgccattgccgtgatcgtcgagaacgcgggctggggcgcgggcgccgcg
gcgcccatcgcgcggcgggtgttcgactactggctcgccaaccagtaccccagcgaggcc
gacctggcggccatcaagatcggcaaggcgaccgcgccgatcggcaagccgcgcgtggcg
agcgaagtggcatggccggccgcggcaacgacgacgcccgccaccgcgccctga

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