Variovorax sp. PMC12: C4F17_17340
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Entry
C4F17_17340 CDS
T05380
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00550
Peptidoglycan biosynthesis
vam01100
Metabolic pathways
vam01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C4F17_17340 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C4F17_17340 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
C4F17_17340 (mrdA)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C4F17_17340 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
C4F17_17340 (mrdA)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
AVQ82575
UniProt:
A0A2P1VBM2
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All DBs
Position
1:complement(3751807..3753780)
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AA seq
657 aa
AA seq
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MTEIRNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVP
VVPNRGLILDRNGIVLASNYSAYTLEITPSKVNDVEETIDSLTQVLEVSPRDRRRFKRLR
EDSRSFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRIN
QREKTAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLAS
HPATPGNTVMLSLDIKLQKLIEDMYGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGI
DNESWAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFG
GHRFGSPEGNLGGVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGE
VRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHK
PHLVLATRNTVSGQVVPMPQPPAENLGYTASAISVIREGLTSVVTSGTARGVFAGAAYQA
AGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGAGAA
APIARRVFDYWLANQYPSEADLAAIKIGKATAPIGKPRVASEVAWPAAATTTPATAP
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaatccgcaacgtcgccgccgacctcgcgcgcttcaagcgccgggtgatcgtc
atcgggctggcggtgctgttcgccttcgggctgctgtgcgcgcggctggtgtacctgcag
gtcacgcgccacgaagacctggccgagcaggccgagagcaaccgcacggcggtggtgccg
gtggtgccgaaccggggcctgatcctcgaccgcaacggcatcgtgctggcctccaactat
tcggcctacacgctggagatcacgccttccaaggtcaacgacgtcgaggaaaccatcgac
agcctgacccaggtgctcgaagtgtcgccacgcgaccgccgccgcttcaagcgcctgcgc
gaagactcgcgcagcttcgattccatccccatccgcacccgcctgagcgatgaagaggtg
gcgcgcttcgcggcccagcgctaccgcttcccgggcgtggaaatcaaggcgcggctgttc
cgcaactacccgcagggcgagctggcctcgcacgtgctcggctacatcggccgcatcaac
cagcgcgagaagaccgcgatggaagactgggacgaggaagagcaggccaactacaagggc
accgactacatcggcaagctcggcatcgagcagagctacgaaaagacgctgcacggccag
accggcgtcgagcagatggaaacctccgccggcgggcgcgccgtgcgccgcctggccagc
catccggccacgccgggcaacaccgtgatgctgtcgctcgacatcaagctgcagaagctc
atcgaggacatgtacggcgaccgccgcggcgcggtggtggccatcgaccccaagaccggc
gaggtgctggccttcgtgagcaagcccaccttcgaccccaacctgttcgtcgaaggcatc
gacaacgagagctgggcggcgctcaccgaatccatcgacaagccgctgctgaaccgcgcg
ctgcgcggcacctacccgcccggctccacctacaagcccttcatggcgctggcggcgctg
cagaccggcaagcgcggtcccagcgtggtggtgaacgaccccggctacttcaacttcggc
ggccaccgcttcggcagccccgaaggcaacctgggcggcgtcgacatgcgccgcgctatc
cagctgtcgagcaacatctatttctactcgctggccaacgagatgggcgtggacctgatc
cacgactccatgaagccgctgggcttcggccagatcaccggcatcgacctgggcggcgaa
gtgcgcggcgtgctgccgagcaccgagtggaagcgcaacgcctacaagcgccccgaggcc
aagaagtggtatgcgggcgagaccatctcgctgggtatcgggcagggctacaacaacttc
acgatgctgcagctggcgcaggccacggccatcgtggcggacggcggtctcaagcacaag
ccgcacctcgtgctggccacgcgcaacaccgtgagcgggcaggtggtgccgatgccgcag
ccgccggcggaaaacctcggctacacggcgtcggccatctcggtgatccgcgagggcctg
accagcgtggtcaccagcggcacggcgcgcggcgtgttcgcgggcgcggcctaccaggcg
gcgggcaagacgggcactgcgcaggccgtgacgcaggcccagaacaccaagtacaacgcc
cgcgcgctcgaagagcaccagcgggaccacgcgctgttcatgggcttcgcgccggtgaac
gacccgaagatcgccattgccgtgatcgtcgagaacgcgggctggggcgcgggcgccgcg
gcgcccatcgcgcggcgggtgttcgactactggctcgccaaccagtaccccagcgaggcc
gacctggcggccatcaagatcggcaaggcgaccgcgccgatcggcaagccgcgcgtggcg
agcgaagtggcatggccggccgcggcaacgacgacgcccgccaccgcgccctga
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