Variovorax sp. PMC12: C4F17_20215
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Entry
C4F17_20215 CDS
T05380
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00550
Peptidoglycan biosynthesis
vam01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C4F17_20215 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vam01002
]
C4F17_20215 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
C4F17_20215 (dacB)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C4F17_20215 (dacB)
Peptidases and inhibitors [BR:
vam01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
C4F17_20215 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
C4F17_20215 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
AVQ83104
UniProt:
A0A2P1VD77
LinkDB
All DBs
Position
1:complement(4372446..4373870)
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AA seq
474 aa
AA seq
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MPLASRRAARALTLVAMLAPAGAALAQQAFPTQVDAALARAKVPRDAVTMLVADADGSRP
PRLAWRTQVPVNPASIMKLVTTYAALDLLGPAYNWTTPVYTDGTVSNGVLNGNLYIKGQG
DPKLVLERMWLLLRHVQGLGITTVSGDIVIDRSAFENTVEGDPAAFDGEPLRPYNASPDA
LLVNFKSVNMSFAPDRAGQFARVNYEPPLASVAMPATVPLVPGECGDWRTALRADFTDVN
RIRFNGGFPAGCGEKSWAVAYADPRTYSLRAIGGMWAEMGGRVGGQMREGRVPAGLKPAF
EFESPPLAEVVRDINKYSNNVMAQQLFLTIGLTQKNRGTFEASRTALGQWWRDRIGTGEA
QPVFENGSGLSRDERISAAALGKMLQVAWRSPVMPELVSSLPAMGVDGTLKKRTLRSGGS
AHLKTGTLRDASGVAGFVDGASGRRYVLVAIANAENAAAARAAFDALVDWASQD
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttgcctcccgccgcgccgctcgcgcactgaccctcgtcgcgatgctggccccg
gccggcgccgccctcgcccagcaagccttcccgacccaggtcgacgccgccctcgcccgc
gccaaggtgccgcgcgacgcggtgacgatgctggtggccgacgccgacggctcgcgcccg
ccgcgcctggcctggcgcacgcaggtgccggtgaacccggcgtcgatcatgaagctggtg
acgacctacgccgcgctcgacctgctcgggccggcctacaactggaccaccccggtctac
accgacggcacggtgagcaacggcgtgctcaacggcaacctctacatcaagggccagggc
gaccccaagctggtgctcgagcgcatgtggctgctgctgcgccacgtgcaggggctgggc
atcaccacggtgagcggcgacatcgtcatcgaccgcagcgccttcgagaacacggtcgag
ggcgacccggccgccttcgacggcgagccgctgcggccgtacaacgcctctccggacgcg
ctgctggtcaacttcaagtcggtcaacatgagcttcgcgcccgaccgcgcggggcagttc
gcccgcgtgaactacgagcccccgctggccagcgtggccatgccggccacggtgccgctg
gtgcccggcgaatgcggcgactggcgcaccgcgctgcgcgccgacttcaccgacgtgaac
cgcatccgcttcaacggcggctttcccgccggctgcggcgagaagagctgggccgtggcg
tatgccgacccgcgcacctacagcctgcgcgccatcggcggcatgtgggccgagatgggc
ggccgcgtgggcgggcagatgcgcgaggggcgcgtgccggcggggctgaagccggccttc
gagttcgagtcgccgccgctggccgaggtggtgcgcgacatcaacaagtacagcaacaac
gtgatggcgcagcagctgttcctcacgatcgggctcacgcagaagaaccgcggcaccttc
gaggcctcgcgcaccgcgctgggccagtggtggcgcgaccgcatcggcacgggcgaggcg
cagccggtgttcgagaacggctcgggcctgtcgcgcgacgagcgcatcagcgccgccgcg
cttggcaagatgctgcaggtggcgtggcgctcgccggtgatgccggagctggtctcttcg
ctgccggccatgggcgtggacggcacgctgaagaagcgcacgctgcgctcgggcggctcg
gcccacctgaagaccggcacgctgcgcgacgcctcgggcgtggccggcttcgtggacggc
gcgagcggccggcgctacgtgctggtggccatcgccaatgccgagaacgcggcggccgcg
cgcgccgcgttcgacgcgctggtcgactgggcctcgcaggactga
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