Variovorax sp. PMC12: C4F17_22205
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Entry
C4F17_22205 CDS
T05380
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00061
Fatty acid biosynthesis
vam00071
Fatty acid degradation
vam01100
Metabolic pathways
vam01212
Fatty acid metabolism
vam02024
Quorum sensing
Module
vam_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
C4F17_22205
00071 Fatty acid degradation
C4F17_22205
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_22205
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vam01004
]
C4F17_22205
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vam04147
]
C4F17_22205
Enzymes [BR:
vam01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
C4F17_22205
Lipid biosynthesis proteins [BR:
vam01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
C4F17_22205
Exosome [BR:
vam04147
]
Exosomal proteins
Exosomal proteins of breast milk
C4F17_22205
Exosomal proteins of breast cancer cells
C4F17_22205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AVQ83447
UniProt:
A0A2P1VE40
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All DBs
Position
1:complement(4769583..4771274)
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AA seq
563 aa
AA seq
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MQTSARQNYPAGVPHEIHPEQYRSLPHMFEEAFGRYADRPFSVCMERWMSFGELDTLSKA
LGAWLQSRGLEPGARVAIMLPNIPQFAVTMCGVLRAGYTCVNVNPLYTARELEHQLKDSG
ATAIVILENFASTLEKVIERTPVKHVVVTSMGDLLGGLYGAWITIAVRHLAKIVPAYKLP
LSDERSVTAFTQAITEGRGRTLGPDRSTLDSVAFLQYTGGTTGLSKGAVLTHRNIVAATL
QAEAWFTPALERAGDLSKVNSIAALPLYHIFALTLCLLAIRQGSHMTLIPNPRDFNKFIA
VLKKRPFHMLPAVNTLFNALLMHPEFKTLDFSTLFVSQAGGMAASEGTARKWFEVTGCPM
IEGWGMSETCAIGTNNPVSNTEFTGTIGLPLPSIEIAIKDDEGNSLPVGQSGELCIKGPN
VMVGYYNQPAETAAAFTADGFMRTGDIAVMQEDGYSRIVDRKKDMILVSGFNVFPNELEN
VISLCPGVVECAAVGVPDEKQGEAIKVFVVRRDPALTEDAVLQYCHSQLTGYKRPKHIEF
RESLPKTNVGKILRRELRASAGA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcagacatccgcgcgacaaaactatcctgccggcgtaccgcacgagattcatcccgag
cagtaccggtccttgccccacatgttcgaggaagccttcggccgctatgccgaccggccg
ttctcggtctgcatggagcgttggatgtcttttggcgaactcgacacgctgtcgaaggcg
ctcggcgcgtggctgcagtcgcgcgggctcgagccgggagcgcgcgtggcgatcatgctg
cccaatattccgcaattcgcggtcacgatgtgcggcgtgctgcgcgcgggctacacatgc
gtgaacgtcaatccgctgtacacggcgcgcgagctggagcatcagctgaaggattcgggc
gcgacggccatcgtcattctcgagaacttcgcgtcgacgcttgaaaaagtgatcgagcgc
acgcccgtgaagcatgtggtcgtgacgtcgatgggcgacctgctcggcggcctgtacggc
gcgtggatcacgatcgcggtgcggcatctggcgaagatcgtgccggcctacaagctgccc
ctgagcgacgagcgctcggtcacggctttcacgcaggcgatcaccgagggacgcggccgc
acgctggggcccgaccgcagcacgctcgactccgtcgcattcctgcagtacacgggcgga
acgacgggtttgtcgaagggcgcggtgctgacgcatcgcaacatcgtcgccgcgacactg
caggccgaagcctggttcacgccggcactcgaacgtgccggcgacctgtcgaaggtcaac
agcatcgcggccctgccgctgtatcacatcttcgcgctgacgctgtgcctgctggcgatc
cggcagggctctcacatgacgctgatccctaacccgcgcgacttcaacaagttcattgcg
gtgctgaagaagcggcccttccacatgctgcccgcggtgaacacgctgttcaatgcgctg
ttgatgcatccggaattcaagacgctcgatttctcgacgctgttcgtttcgcaggcggga
ggcatggcggcctctgaaggaacggcacgcaagtggtttgaggtcaccggctgcccgatg
atcgagggctggggaatgagcgagacctgcgcgatcgggacgaacaaccccgtgtcaaac
accgagttcactgggacgatcgggctgccgctgccgagtatcgagatcgcgatcaaggac
gacgaaggcaattcactccccgtggggcagtccggcgaactctgcatcaagggccccaac
gtgatggtgggctactacaaccagcccgccgagaccgcagcggcgttcacggcagatggc
ttcatgcggactggcgatatcgcggtgatgcaggaagatggctacagccggatcgtcgat
cgcaagaaagacatgatcctggtgagcggcttcaacgtgtttccgaacgagctggaaaac
gtgatttcgctctgccccggggtcgtcgaatgcgcggctgtgggtgtacccgacgagaag
cagggagaggcgatcaaggtgttcgtggtgcgaagggacccggcattgaccgaggacgcg
gtgctccagtattgccactcgcagctcaccggctacaagcggcccaagcacatcgagttt
cgggagtcgctgccgaagacgaatgtggggaagatcctgcggcgggagcttcgcgccagc
gcgggcgcctga
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