Variovorax sp. PMC12: C4F17_28830
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Entry
C4F17_28830 CDS
T05380
Symbol
glgX
Name
(GenBank) glycogen debranching enzyme GlgX
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00500
Starch and sucrose metabolism
vam01100
Metabolic pathways
vam01110
Biosynthesis of secondary metabolites
Module
vam_M00565
Trehalose biosynthesis, D-glucose 1P => trehalose
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
C4F17_28830 (glgX)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
C4F17_28830 (glgX)
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Gene cluster
GFIT
Motif
Pfam:
CBM_48
Alpha-amylase
Isoamylase_C
DUF3459
Glyco_hydro_31_2nd
Motif
Other DBs
NCBI-ProteinID:
AVQ85062
UniProt:
A0A2P1VIR7
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All DBs
Position
2:complement(290611..292755)
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AA seq
714 aa
AA seq
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MSTASDANAKYSAEEGHAYPLGATYRDDGVNFAVFSAHATRVDVCIYDEAGEKELGCVTL
PEYTDEVWHGFIPGLQPGARYGLRVHGPYEPEKGHRFNHHKLLLDPYAKAHMGELKWGPE
LFGYTVGHPDGDLSFDERDSAPFMPKCVVVDSKFAWSQPQGPMVPWSDTVFYETHVRGFT
MRHPGVPENLRGTFAGMAQDAVIAGMRELGVTSVELLPIQYFLNQPFLTDKGLTNFWGYD
TIGFFALDQRYMDGPHIDEFKHMVDRFHSQGLEVILDVVYNHTPEGNELGPTISFKGIDN
ASYYRLMPNEPRYYINDTGTGNTVNLSHPRVLQMVTDSLRYWVTEMRVDGFRFDLATILA
REPHGFDEGGGFLKSCRQDPVLSSVKLIAEPWDIGPGGYQVGGFPPGWAEWNDQFRDTVR
AFWKGDEAMAPKLASCVTASADRFNNRGRRPWASVNFISAHDGFTLADTVSYNERHNEAN
GEDNRDGHSDNRSWNCGAEGPTDDPQILALRARQQRNQLATLFLSQGTPMLLAGDEFGRT
QKGNNNAYCQDDDISWVDWEAAGTDAARALRGFTQKLLALRRQTPVLRRNRFLTGATFGG
EGGAKDAAWFAPDGNEMTPAHWEDTQTRSFALLLDGRAPVSAVDRPAHDTSALVIFNGWQ
DAVPFKLPPAPGEPWTLAMETNNDANGSSNETFEEYLATGRSVLVFLSAPRASE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgcttccgacgccaacgccaaatattctgcggaggagggccatgcttatccg
cttggggccacgtatcgagacgacggggtcaacttcgccgtcttttcggcgcatgcgacc
cgggtcgacgtctgcatctacgacgaggccggtgaaaaggaactgggctgtgtcaccctg
ccggaatacaccgacgaggtgtggcacggcttcatcccgggcctgcagcccggcgctcgc
tatggcctgcgtgttcatggcccctatgagccggagaagggccaccgcttcaatcaccac
aagctcctgctcgatccctatgccaaggcccacatgggcgagctcaaatggggacccgag
ctgttcggctacaccgtgggccacccggatggcgacctgagcttcgacgagcgcgacagc
gcgcccttcatgccgaaatgcgtggtcgtggattcgaagttcgcgtggtcgcagccccag
ggaccgatggtgccctggagcgacacggtgttctatgaaacccatgttcgcggcttcacg
atgcgccacccgggcgtgcccgagaacctcagaggcaccttcgcgggcatggcgcaggat
gcggtgatcgccgggatgcgtgagctgggcgttaccagcgtcgagctgctgccgatccag
tattttctgaaccagccgttcctgacggacaagggactgaccaacttctggggctacgac
acgatcggcttcttcgcgctggaccagcgctacatggacggtccgcacatcgacgagttc
aagcacatggtggaccgtttccacagccaggggctcgaggtgatcctcgacgtggtctac
aaccacacgcccgagggcaacgaactgggcccgaccatttccttcaagggcatcgacaac
gcgagctactaccgcctgatgccgaacgagccgcgctactacatcaacgacacgggcacc
ggcaacaccgtcaacctgagccatccgcgtgtgctccagatggtcacggacagcctgcgg
tactgggtgaccgaaatgcgcgtggacggctttcgcttcgacctggccacgatcctggcg
cgcgagccgcacggcttcgacgaaggcggcggcttcctgaagagctgccggcaggatccg
gtgctctccagcgtgaagctcatcgcggagccgtgggacatcggcccgggcggctaccag
gtcggcggctttccgccgggatgggccgagtggaacgaccagttccgcgacacggtgcgt
gcattctggaaaggcgatgaagccatggcgcccaaactggcttcctgcgtcacggccagt
gccgaccgcttcaacaaccgcggccgccgcccctgggcgtcggtgaacttcatcagcgcg
cacgacgggttcacgctggccgataccgtgagctacaacgagcggcacaacgaagccaac
ggcgaagacaaccgcgatggccattcggacaaccgcagctggaactgcggcgccgaaggt
cctaccgacgacccccagatccttgcactgcgcgcgcggcagcagcgaaaccagctggcc
acgctgttcctgtcccaaggcacgccgatgctgctggccggcgatgagttcgggcgaact
caaaagggcaacaacaacgcgtactgccaggacgacgatatttcgtgggtggactgggag
gctgcaggcacggacgctgcacgcgcattgcgcggcttcacgcagaagctgctggcgctt
cgcaggcagacccccgtgctgcgccgcaatcgcttcctgacgggagcgacattcggagga
gagggcggcgccaaggacgccgcctggttcgctcccgacggcaacgagatgacgcccgcg
cactgggaggacacgcagacgcggtcgttcgcgctgcttctggatggcagagcgcccgtg
tcggcggtcgaccggcccgcgcacgacaccagcgcgctcgtcatcttcaacggctggcag
gacgcggtgcctttcaagcttccccccgcacccggcgagccctggacgctggccatggaa
acgaacaacgacgcgaacggttcatcgaacgagaccttcgaggaatatcttgcgaccggc
cgttcggtcctggttttcctgagcgcgccgcgcgcgtccgagtga
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