Variovorax paradoxus S110: Vapar_0277
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Entry
Vapar_0277 CDS
T00916
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Vapar_0277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_0277
Enzymes [BR:
vap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Vapar_0277
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Vapar_0277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
ACS16940
UniProt:
C5CY36
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All DBs
Position
1:complement(297883..298686)
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AA seq
267 aa
AA seq
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MFKLTSLNLNGLRSAATKGVADWVAELAPDCICMQEIRVQASDIEGRFEEMAGLKGHFHF
AEKKGYAGTAIYTRHAPSAVVVGWGDAEFDAEGRYLELRFDTPRRKLSIISCYFPSGSSG
EERQEAKFRFLKGFFPHLTALKKEREFILCGDINIAHKEIDLKNWRGNQKNSGFLPEERA
WMTRLLDAGADGAGLVDVYRLLKPDTTGEAYTWWSNRGQAYANNVGWRLDYHLATPALGA
LARSEQIYKTIKFSDHAPITVDYDFTL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaaactgaccagcctcaatctcaatggcctgcgttcggccgccacgaagggggtg
gcggactgggtggccgaacttgcgccggattgtatttgcatgcaggagatccgggtgcag
gcgagcgacatcgaaggccgtttcgaggaaatggccggcctcaagggccatttccatttc
gccgagaaaaaaggctacgccggcaccgcgatctacacccgccacgcgccgagcgccgtg
gtggtgggctggggcgatgccgaattcgacgccgagggccgctatctcgaactgcgcttc
gacacgccccggcgcaagctctcgatcatcagctgctacttcccgagcggcagttcgggc
gaagagcggcaggaagccaagttccgcttcctgaagggcttctttccgcacctcaccgcg
ctcaagaaggagcgcgaattcatcctttgcggcgacatcaacatcgcccacaaggaaatc
gacctcaagaactggcgcggcaaccagaagaacagcggcttcctgcccgaggagcgcgcc
tggatgacccggctgctggacgccggcgccgacggcgcgggcctggtcgacgtctaccgc
ctgctcaagcccgacaccacgggcgaggcctacacctggtggagcaaccgcggccaggcc
tacgcgaacaacgtgggatggcggctggactaccacctggccacgccggccctgggcgcg
ctcgcgcgcagcgagcagatctacaagaccatcaagttcagcgaccacgcgccgatcacg
gtggactacgacttcacgctgtag
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