Variovorax paradoxus S110: Vapar_3032
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Entry
Vapar_3032 CDS
T00916
Name
(GenBank) Ribulose-bisphosphate carboxylase
KO
K01601
ribulose-bisphosphate carboxylase large chain [EC:
4.1.1.39
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00630
Glyoxylate and dicarboxylate metabolism
vap00710
Carbon fixation in photosynthetic organisms
vap01100
Metabolic pathways
vap01110
Biosynthesis of secondary metabolites
vap01120
Microbial metabolism in diverse environments
vap01200
Carbon metabolism
Module
vap_M00165
Reductive pentose phosphate cycle (Calvin cycle)
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Vapar_3032
09102 Energy metabolism
00710 Carbon fixation in photosynthetic organisms
Vapar_3032
Enzymes [BR:
vap01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.39 ribulose-bisphosphate carboxylase
Vapar_3032
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RuBisCO_large
RuBisCO_large_N
Motif
Other DBs
NCBI-ProteinID:
ACS19651
UniProt:
C5CPR2
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Position
1:complement(3189692..3191158)
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AA seq
488 aa
AA seq
DB search
MGNMNEAIQITDAKKRYSAGVLKYAQMGYWDGDYVPKDTDILALFRITPQEGVDAIEAAA
AVAGESSTATWTVVWTDRLTACDMYRAKAYKVEPVPNNPGQYFCYVAYDLSLFEEGSITN
VTASIIGNVFSFKPLKAARLEDMKFPVAYVKTFPGPPTGIVVERERLDKFGRPLLGATTK
PKLGLSGRNYGRVVYEGLRGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEV
KGSYLNVTAGTMEEMYRRAQFAKELGSVIVMVDLVIGYTAIQSMSNWCRQNDMILHLHRA
GHGTYTRQKNHGVSFRVIAKWMRLAGVDHIHAGTAVGKLEGDPMTVQGYYNVCRDTHTKV
DLPRGIYFDQDWGALRKVMPVASGGIHAGQMHQLLDLFGDDVVLQFGGGTIGHPQGIQAG
ATANRVALEAMVLARNEGRDIANEGPQILRDAAKWCTPLAAALDTWGEISFNYASTDTSD
YVPTPSVA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacatgaacgaagcaatccagatcaccgacgccaagaagcgctactcggccggt
gtgctcaagtacgcgcagatgggctactgggacggcgactacgtgcccaaggacacggac
atcctcgcgctcttccgcatcacgccgcaggaaggcgtggacgccatcgaggccgccgcg
gccgtggccggcgaatcgtccaccgccacctggacggtggtgtggaccgaccgcctcacg
gcctgcgacatgtaccgcgccaaggcctacaaggtggagccggtgcccaacaatccgggc
cagtatttctgctacgtggcctacgacctctcgctgttcgaggaaggctcgatcaccaac
gtgacggcttccatcatcggcaacgtcttcagcttcaagccgctgaaggccgcgcggctg
gaggacatgaagttcccggtggcctacgtcaagaccttcccgggcccgccgaccggcatc
gtggtggagcgcgagcggctcgacaagttcggccggccgctgctgggcgccaccaccaag
cccaagctcgggctctcgggccgcaactacggccgcgtggtgtacgaaggcctgcgcggc
gggctcgacttcatgaaggacgacgagaacatcaactcgcagcccttcatgcactggcgc
gaccgcttcctgttcgtgatggacgccgtcaacaaggccagcgccgccaccggcgaggtc
aagggcagctacctgaacgtcacggccggcaccatggaagagatgtaccgccgcgcgcag
ttcgccaaggagctgggctcggtgatcgtgatggtcgacctcgtgatcggctacacggcc
atccagtcgatgagcaactggtgccgccagaacgacatgatcctgcacctgcaccgcgcg
ggccacggcacctacacgcgccagaagaaccacggtgtgagcttccgggtgatcgccaag
tggatgcgcctggcgggcgtggaccacatccatgcgggcacggccgtgggcaagctcgag
ggcgacccgatgacggtgcagggctactacaacgtgtgccgcgacacgcacaccaaggtc
gacctgccgcgcggcatctacttcgaccaggactggggcgcgctgcgcaaggtgatgccg
gtggcctcgggcggcatccatgcgggccagatgcaccagctgctcgacctgttcggcgac
gacgtggtgctgcagttcggcggcggcaccatcggccacccgcagggcatccaggccggg
gccacggccaaccgcgtggcgctcgaagccatggtgctggcgcgcaacgaaggccgcgac
atcgccaacgaggggccgcagatcctgcgcgacgcagccaagtggtgcacgccgctcgcg
gccgcgctcgacacctggggcgagatctccttcaactacgcctccaccgatacctcggac
tacgtgccgacgccgtcggtggcctga
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