KEGG   Variovorax paradoxus S110: Vapar_4858
Entry
Vapar_4858        CDS       T00916                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
vap  Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:vap00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vap03400]
    Vapar_4858
Enzymes [BR:vap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Vapar_4858
    5.6.2.6  RNA 3'-5' helicase
     Vapar_4858
DNA repair and recombination proteins [BR:vap03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Vapar_4858
SSDB
Motif
Pfam: Lhr_WH DEAD_assoc DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: ACS21462
UniProt: C5CN99
LinkDB
Position
1:complement(5174594..5177452)
AA seq 952 aa
MLEGREPPSPPSPGRGRSKAAAVKAALDAWSAPPDPEFLPPLPGEGRGGGKRRTKNPPPV
VEGREPPSLPSPGRGRSKAAVVKAALDAWFAARGWKPFKFQRDVWKAVAAGRSGLLHATT
GAGKTYAVWLGALQAFSSAAPPPSRSARATPPPPLTVLWITPMRALAADTLRALQQPLEA
MDAQGIDLHRWSAGARSGDTSSAERSAQNERLPTVLVTTPESLSLLLARADASEVLGRVR
MVVVDEWHELLGNKRGVQVQLALARLRRWNAGLAVWGMSATLGNLQEAMHALLGDQEGVL
VQGAVPKKLVVDSLLPGRAERFPWGGHLGLTMLPQVLDEIAASSTTLVFTNTRSQSEIWY
QAMLEARPEWAGLIALHHGSLDRAVREWVELGLKNGELKAVVCTSSLDLGVDFLPVERVL
QIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSIEMVEGAAARAAIAAGHIEARHTPV
QPLDVLVQHLVTVALGGGFVPDDLYAEVRGTAAYADLSRESWAWCLAFVSQGGPSLAAYP
DYRRAVPDAEGVWRVPDARLARRHRMNIGTIVSDASMAVQYMGGARIGSVEEGFVARMKP
GDCFLFGGRLLELVRIHDMTAWVRRATGKRAAVPRWNGGRMPLSTTLADAVVQQLALAGA
GRYNSPELQCVRPLLEIQQQWSALPTPETLLAETLATREGSHLFLYPFAGRHVHMGLASL
LAWRVAQHEARTFSIAVNDYGFELLSATPVDWPALLPQVLRLPQGEDAHATLLHEVLASL
NAGELAQRRFREIARVSGLIFQGYPGEKRSSRQLQASSSLFWEVFRKYDPANKLLLQAEQ
ELLAQELEIGRLAASLARMATQQLVLKPLERPTPFSFPLMVELFREKLSNENVADRIARM
VEQLEKAAGGVVTAGGVERVKSTLAFGQEGPGKPPAAPRRERRRPSRPLPPL
NT seq 2859 nt   +upstreamnt  +downstreamnt
gtgctcgaaggccgcgagcccccatccccgccttcccccggaaggggaaggagcaaggca
gctgcagtcaaggcggcactcgacgcctggtccgcgccgccggaccccgaatttctccct
ccccttccgggggagggccggggtgggggcaagcggcgcaccaagaacccgccgcctgtc
gtcgaaggccgcgagcccccatccctgccttcccccggaaggggaaggagcaaggcagcg
gtagtcaaggcggcgctcgacgcctggtttgcagcgcgcggctggaagcctttcaagttc
cagcgcgacgtatggaaggccgtggccgcgggccgctccgggctgctgcacgcgaccacc
ggcgcgggcaagacctacgcggtgtggctcggcgcgctgcaggcgttctcgtccgcggcg
ccgccgccttcgcgcagcgcaagggccacgccgccgccgccgctcaccgtgctgtggatc
acgcccatgcgcgcgctcgcggccgacacgctgcgcgcgctgcagcagccgctcgaagcc
atggatgcccagggcatcgacctgcaccgctggagcgccggtgcgcgcagcggcgacacc
tcgtcggccgagcgcagcgcgcagaacgagcgcctgcccacggtgctcgtcaccacgccc
gagagcctgtcgctgctgctcgcgcgcgccgacgcgagcgaggtgctgggccgcgtgagg
atggtggtggtcgatgaatggcacgagctgctcggcaacaaacgcggcgtgcaggtgcag
ctggcgctcgcgcggctcaggcgctggaatgcggggctcgcggtgtggggcatgtcggcc
acgctcggcaacctgcaggaggccatgcacgcgttgctcggtgatcaagaaggcgtgctg
gtgcagggcgcggtgcccaagaagctggtggtcgattcgctgctgcccggccgcgccgag
cgctttccgtggggcgggcacctgggcctcacgatgctgccgcaggtgctcgacgagatt
gccgccagcagcaccacgctggtgttcaccaacacgcgctcgcaatcggagatctggtac
caggccatgctcgaggcgcggcccgaatgggccggcctcatcgcactgcaccacggctcg
ctcgaccgcgcggtgcgcgagtgggtcgagctgggcctcaagaacggcgagctcaaggcc
gtggtctgcacctcgagcctggacctgggcgtcgactttttgccggtcgagcgcgtgctg
cagatcggttcgcccaagggcgtggcgcggctgctgcagcgcgcggggcgctcgggccat
gcgccgggccggccctcgcgcatcacgctcgtgcccacgcacagcatcgagatggtcgaa
ggcgccgcggcgcgcgcggccattgcggccggccacatcgaggcgcgccacacgccggtg
cagccgctcgacgtgctggtgcagcacctggtgacggtggcgctcggcggcggcttcgtg
cccgacgacctgtatgccgaagtgcgcggcaccgccgcctatgcggatctgtcgcgcgag
agttgggcgtggtgcctggccttcgtctcgcagggcgggccatcgctggccgcgtatccc
gactaccgccgcgcggtgcctgatgcggagggcgtctggcgcgtaccggatgcgcggctc
gcgcggcgccaccgcatgaacatcggcaccatcgtgagcgatgcgagcatggcggtgcag
tacatgggcggcgcgaggatcggcagcgtcgaggaaggctttgtggcgcgcatgaagccc
ggcgactgcttcctgtttggcgggcggctgctcgaactcgtgcgcatccacgacatgacg
gcctgggtgcggcgcgccaccggcaagcgcgccgcggtgccgcgctggaacggcgggcgc
atgccgctgtcgaccacgctggccgatgcggtggtgcagcagctcgcgctggccggcgcg
gggcgctacaactcgcccgagctgcagtgcgtgcggccgctgctcgagatccagcagcaa
tggtcggccctgcccacgcccgagacgctgctggccgaaacgctggccacgcgcgaaggc
tcgcacctgttcctctatcccttcgcgggacgccacgtgcacatgggacttgcgagcctc
ctggcctggcgcgtggcgcagcacgaggcgcgcactttctccattgcggtgaacgactac
ggcttcgagctgctgagcgccacgccggtcgactggcccgcgctgctgccccaggtgctg
cgcctgccgcagggcgaggatgcgcatgccacgctgctgcacgaggtgctggcctcgctc
aacgcgggcgaactcgcgcagcgccgcttccgcgagattgcgcgcgtctcggggctgatc
ttccagggctatccgggcgagaagcgcagcagccggcagctgcaggcctcgtcctcgctg
ttctgggaggtgttccgcaagtacgacccggcgaacaagctgctgctgcaggccgagcag
gaactgctcgcgcaggagcttgaaatcggccgcctggcagccagcctcgcacgcatggcg
acccagcagctggtgctgaagccgctcgagcggcccacgcctttttcgtttccgctcatg
gtcgagctgttccgcgagaagctgtcgaacgagaacgtggctgaccgcattgcgcgcatg
gtcgagcagctcgaaaaggccgcgggcggcgtggtcacggccggcggcgtggagcgcgtg
aaaagcacgctcgcgttcggccaggaagggccgggcaagccgccggctgcgccgcgccgc
gagcgcaggcggccctcacggcccttgccgccgctctga

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