Vigna angularis (adzuki bean): 108326316
Help
Entry
108326316 CDS
T04660
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
var04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108326316
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108326316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108326316
04121 Ubiquitin system [BR:
var04121
]
108326316
03400 DNA repair and recombination proteins [BR:
var03400
]
108326316
Enzymes [BR:
var01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108326316
Spliceosome [BR:
var03041
]
Complex B
Other components
Prp19 complex
108326316
Complex C
Prp19-CDC5 complex
108326316
Ubiquitin system [BR:
var04121
]
Ubiquitin ligases (E3)
U-box type E3
108326316
DNA repair and recombination proteins [BR:
var03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108326316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
PROPPIN
U-box
WD40_like
PAS_11
zf-Nse
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
108326316
NCBI-ProteinID:
XP_017415235
LinkDB
All DBs
Position
2:1258410..1266705
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQYPVSALNAPTANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSVIS
ELTDCNAALSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDIHCSKDLIA
TGGIDTNAVIFDRSSGQILSTLSGHSKKVTSVKFVAQGESILTGSADKTVRLWQGSDDGN
YNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYT
SAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDG
VKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKT
FPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPGEDAPTES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctccatctccggcgaagttccggaagagcccgtcgtgtccaggaactctggt
cttctcttcgagaagcgtttgatcgagcgacacatttcggattatggcaagtgtccaatt
actggcgaaccacttactatggatgacattgtaccaatcaagacagggaagatagtgaag
cccagacctgtccaggcagctagcatccctggcatgcttggaatgttccaaaatgaatgg
gatgggttgatgttatctaattttgcattggagcaacaattgcacacggcaaggcaagag
cttagtcatgctctctaccagcatgatgctgcatgccgagtgattgctagacttaaaaag
gaacgagatgaagctaggtccttacttgcgcaagcagaaaggcagtaccctgtttctgca
ctaaatgctccaactgcaaatgcccctgttctgagcaatggaaaaagagctgctgaggat
gaggatctggctcctggtgcaaagaaaattcatcctggaatatcttctagcgtaatttct
gagctaactgattgcaatgctgctctctcccagcagagaaagaagagacagattcctgcc
actttggctcctattgaagctctggagtcatatacccagatatctagtcatccctttcac
aaaacaaacaaacaaggcattatatcccttgatatccattgttctaaggacttaattgca
actggaggtattgatacaaatgctgttatttttgaccgatcttcaggacagatattatct
acactaagtggtcactccaaaaaggtgaccagtgtaaagtttgtagctcagggtgaatca
atcttaactggttcagcagataagacagttcgtctgtggcaagggtcagatgatggtaac
tataactgcaggcacatcttaaaggatcatacagctgaggtgcaagctgtcactgtccat
gctaccaataattattttgtgactgcttcacttgatggctcttggtgtttttatgaactt
tcttcagggacatgtttgactcaggttttcgactcttcaggttcttctgaaggctacaca
tcagccgctttccatcctgatggtctcatccttggaactggtaccacagaatctcttgtt
aagatttgggatgtaaaaagccaggcaaatgttgctaggttcgatggacatgctggtcca
gtaactgccatttctttttctgagaacggatacttccttgcgactgctgctcacgatggt
gttaagctttgggatctacggaaattgaagaactttaggaattttgctccatatgattcg
gaaacaccaacaaactctgtggagttcgaccacagtggatcctaccttgcaattgctggc
tcggatataaggatttaccaagttgcaaatgtgaaatctgaatggaactgtattaaaacc
ttccccgatttatccggaacaggtaaggccacgtgtgtaaaatttggtgcagactctaaa
tacatagctgttggatcaatggaccggaatcttcgaatatttggcttgcctggcgaagat
gctcccactgagtcataa
DBGET
integrated database retrieval system
