Vibrio astriarenae: GT360_21150
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Entry
GT360_21150 CDS
T06574
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vas
Vibrio astriarenae
Pathway
vas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT360_21150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vas03019
]
GT360_21150
03009 Ribosome biogenesis [BR:
vas03009
]
GT360_21150
Enzymes [BR:
vas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT360_21150
Messenger RNA biogenesis [BR:
vas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT360_21150
Ribosome biogenesis [BR:
vas03009
]
Prokaryotic type
rRNA helicases
GT360_21150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
WSD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIA66004
UniProt:
A0A7Z2YGA0
LinkDB
All DBs
Position
2:1547343..1549268
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AA seq
641 aa
AA seq
DB search
MQDSEIKFSDLSLNDSILSALNEMGFVSPTPIQAAAIPHLMKGADALGKAQTGTGKTAAF
SLPLLNKLDLAQRKPQAIVLAPTRELAIQVAAEVKNLGRNISGLKVLEIYGGTSIVDQMR
ALKNGAHIVVGTPGRVQDLINRDRLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPETVDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLSDWLTARGFRSAALHGDIPQSQRERTVDNIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI
ERVTKSSMEEIQLPMRDKVAEARLVKLGAELEAEKEHKSLEKFSELVEKLQESLEIDATT
LAAILLKRQQGKRPLFYIGEDPMIAAIERDKQRRRDRRDGGRDGGRGERGGRDFSNQDWD
TYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDRGETYVQLPKAMPSDVAGKLSK
LRIRQKEAGAVVVDFNDFREPRGRRDGGRDGNRGGYRGNRDGNREGGRDGNRGGYRGNRD
GNREGGRGRRDGERRFDRNRGGDNRGNYRGERGHGRRDNQE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgaaatcaaatttagcgacctgtcgctgaatgattctatcctttctgct
cttaacgaaatgggctttgtttcaccgactcctatccaggcagctgcaattcctcaccta
atgaaaggtgctgatgcgctaggtaaagctcaaaccggtactggtaaaacagccgctttc
tctctaccacttctaaacaaactagaccttgcacagcgtaagcctcaagctatcgttctt
gcaccgacgcgtgaacttgctatccaagttgctgctgaagtgaaaaacctaggtcgcaac
atctctggtctgaaagtacttgagatctacggtggtacatctatcgttgaccaaatgcgt
gctcttaaaaatggcgcacacattgttgtaggtactcctggtcgtgttcaagaccttatt
aaccgtgaccgtctgcacctagatgaagtatcaacattcgttcttgatgaagcggatgag
atgctgaacatgggttttgttgacgatgtaactgcaatcatggagcacgctcctgaatct
gcacaacgtgtactcttctctgcgactatgcctccaatgctgaaaaacattgttgagcgc
ttcctgcgtgatcctgaaactgttgacgttgcgggtaaaaaccacacagttgataaagta
gagcagcagttctgggttgttaaaggtgtagagaaagatgaagcaatgtctcgtcttctc
gaaactgaagaaacagacgcgtctatcgtattcgtacgtactcgccaagatactgaacgt
ctatctgattggctaactgctcgcggtttccgttcagcagcacttcacggtgacattcct
cagtctcaacgagagcgtaccgtagacaacatcaaacaaggcgttatcgacatccttgtt
gcgactgacgttgttgctcgtggtcttgacgttccacgtatcacacacgtatttaactac
gacatcccattcgatgttgaatcatacatccaccgtatcggtcgtactggccgtgctgga
cgtaaaggtaaagcgattcttctagttcgcactaaccaaatgcgcatgcttcgcactatc
gagcgtgtaactaagtcttcaatggaagagattcaacttccaatgcgtgacaaagtggca
gaagcacgtctagttaaactaggtgctgagcttgaagctgagaaagagcacaagtcacta
gagaagttctctgagctagttgagaaactgcaagagtctctagagatcgacgcaacaaca
ctggctgcgattcttcttaagcgtcagcaaggtaagcgtcctctattctacattggcgaa
gacccaatgatcgctgcaatcgagcgcgacaaacagcgtcgtcgtgatcgccgtgatggc
ggtcgtgatggtggccgtggtgagcgcggtggccgtgacttcagcaaccaagattgggat
acttaccagcttcaagttggccgtgagcaaggcgttcaggtgaaagacatcgttggcgca
ctagcaaacgagcttggcctaacgaaaggttctatcggtgcaatcaagctagaccgtggc
gaaacttacgttcagctaccaaaagcaatgccttctgacgttgcaggtaagctaagcaag
ctacgcattcgtcaaaaagaagcgggtgctgttgttgttgacttcaatgacttccgtgaa
cctcgtggtcgtcgtgatggcggtcgtgatggtaaccgtggtggataccgcggcaaccgc
gacggtaatcgtgaaggtggtcgtgatggcaaccgcggcggataccgtggcaatcgcgat
ggtaaccgtgaaggtggtcgtggccgtcgtgatggcgagcgtcgttttgaccgcaaccgt
ggtggcgacaaccgtggtaactaccgtggcgaacgtggccatggccgtcgtgacaaccaa
gagtaa
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