Nibricoccus aquaticus HZ-65: CMV30_09295
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Entry
CMV30_09295 CDS
T05426
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vbh
Nibricoccus aquaticus HZ-65
Pathway
vbh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CMV30_09295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbh03400
]
CMV30_09295
Enzymes [BR:
vbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CMV30_09295
DNA repair and recombination proteins [BR:
vbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CMV30_09295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
AlaDh_PNT_C
Vit_b-sht_shell
Motif
Other DBs
NCBI-ProteinID:
ATC64133
UniProt:
A0A290Q6T3
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All DBs
Position
complement(2292613..2293539)
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AA seq
308 aa
AA seq
DB search
MSTSLKTTLDVGGTKVAVSNLKKVLYPDVSFTKGDVIDYYIRISKVLLPHLKNRPITLKR
YPDGVNGFFFYEKQCPPHRPKWIKTTTVPKSDGTDIHYCVMNDLPALVWAANLADLELHT
FLHRAPAIHRPTALAFDLDPGAPANIVQCCEVALLLKSIFDSFGLKSFAKTSGSKGLQIY
VPLNTPSATYEKTKTFAHQLAILLEQQAPKLVVSKMLKTLRRGKVLVDWSQNDDHKTTIN
VYSLRAKPHPTVSTPVTWAEVSAALKKKNAKLLTFETTDVLKRVKKHGDLFADVLTLKQK
LPALSALG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccctcaaaaccacgctcgatgtcggcggcacgaaagtcgccgtctccaat
ctcaaaaaagtcctgtatccggatgtcagtttcaccaaaggcgacgtcatcgattactac
atccgcatctcgaaagtcctcctccctcatctcaaaaatcgccccatcacgctcaagcgc
taccccgacggcgtgaacggctttttcttctacgagaaacaatgcccgccccaccgcccc
aagtggatcaagacgaccaccgtccccaaatccgacggcaccgacatccactactgcgtg
atgaacgacctccccgcgctcgtctgggccgccaacctcgccgacctcgaactccacacc
tttctccaccgcgcccccgcgatccaccgccccaccgccctcgccttcgacctcgatccc
ggcgcccccgccaacatcgtccaatgctgtgaagtcgccctgttgctcaagtctatcttc
gactccttcggcctgaaatccttcgccaaaacctccggctccaaaggacttcaaatctac
gtcccgctcaacacgccctccgccacctacgagaaaaccaaaaccttcgcgcaccaactc
gccatcctcctcgagcaacaagcccccaaactcgtcgtctccaaaatgctgaaaacactc
cgccgcggcaaagtcctcgtcgattggagccagaacgacgaccacaagaccacgatcaac
gtctactccctccgcgccaaaccccacccgacagtctccacgcccgtcacgtgggccgaa
gtctccgctgcgctgaaaaagaaaaacgcgaaactcctcaccttcgaaacgaccgacgtc
cttaaacgcgtcaaaaaacacggcgacctcttcgccgacgtcctcacgctgaagcaaaaa
ctccccgccctcagcgctctcggataa
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