Venturia canescens: 122415237 Help Entry 122415237         CDS       T09386                                  Name (RefSeq) collagen alpha-1(XI) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism vcan  Venturia canescens Pathway vcan04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:vcan00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     122415237  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:vcan00536]     122415237 Glycosaminoglycan binding proteins [BR:vcan00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    122415237 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 DUF3108 Motif Other DBs NCBI-GeneID:  122415237 NCBI-ProteinID:  XP_043283160 EnsemblRapid:  LOC122415237 LinkDB All DBs Position 1:18847124..18856696 Genome browser AA seq 1774 aa AA seqDB search MRFDDTKRSWKTRRLVVRITKKCILLQVLVMAIVYLQMRGVEAEFTNLGQGIVDLLESTG MHEEPTGVTPKKSRCGYNGTTAYEIGEAALLTANTITLFPHGFPQDFSILIVAKPKLDSP ASTLFTVYSDNGEEQLVVSLGNDVTLLYNTVLDEILNPISFGINVADGNWHRLGFSLKGD AVTLITDQETQITRELRRDTTTTITTSGIIIIGQQLVDGYLYMGEIEMLKIAPTPDSAYE ITTVFAPDCESRSGRFNVSAATFSTIHIPPGEESLEYERRSRQRYGSSIRNLTGSFDDRV SRNATRVSFDADYDDEDELTEGPTAEDDDDEEYATGEPNIETNPLPTASHAFSAIRGSFI HSGAASLPDYSTITSYEGEEQDGKLPTDSPSISSSEGSYYTNYGYYNVRGPSGPRGFPGP PGVPGVQGQKGEPGRDGLGGTEGAPGPPGHVFMIPLNQQGNEKGPDAQADMLRQLLSQHM LAMRGIEGPMGLTGVSGPDGPPGPQGQKGDPGDIGEPGPRGEAGPIGNPGREGKRGRPGR DGDRGVTGQRGVKGEQGLPGLPGLPGDKGERGSTGAVGEQGLPGHEGLQGDDGPPGLVGL PGEMGPRGFVGPRGFPGLPGNPGIPGSEGPPGPKGSTGSLGPPGQAGQNGPTGPVGPPGP QGPLGPTGLVGPQGKPGIPGLPGADGSPGHPGNPGGPGMKGDQGLQGPQGAIGFPGVRGM KGDEGKRGAAGDRGDKGEPGSEGDKGDMGAKGEVGPPGPQGIPGLEGLEGMKGMEGPRGE TGSTGPPGEKGKIGIPGFPGYPGNIGDKGDKGQTGRQGSVGDKGERGHAGSPGERGEVGP RGFRGARGRRGSEGTPGPKGDTGQPGSPGPQGEQGLPGIEGPRGFAGPPGPAGLDGKDGI AGPPGERGPVGESGPPGPSGIPGVVGPPGPAGEAGQPGEGGQPGSQGAPGEPGPPGDKGS EGPHGPPGPPGKDGPPGTGGLPGFPGDRGLDGATGMPGLKGEMGIPGPPGPTGDKGAQGE PGKDGTIGPEGRSGPNGPPGPVGPKGEMGEPGNAGPIGRDGLPGQRGLPGAPGPIGVPGE DGDKGELGLPGEKGLKGSRGEIGPPGPPGSQGVRGEPGLTGQPGEKGPPGEIGRRGTKGE DGPVGVPGSAGPIGLQGLPGPPGLKGEMGDTGAVGLAGPPGSPGEQGPRGIKGVEGTQGP VGPEGQMGAKGDTGNPGPPGTPGTEGKPGNLGAPGPKGEDGKTGPAGSPGERGIPGPEGP KGNLGPPGFPGPPGETGLPGGKGESGKDGDDGPPGEPGPSGEIGPPGKEGAAGTPGKPGT EGPAGLQGHPGLPGEPGDPGSLGPIGNPGPPGIQGPPGPKGSQGLTGQPGVSGENGAPGM PGSEGAPGAVGPAGPKGQRGDRGRRGMKGHRGDIGHVGIKGDQGEKGEKGMRGVFGLEGP KGSPGPHGPEGVKGNDGPPGLPGMEGPPGMKGIMGNDGMKGDVGPPGPPGPPGPPAEQPM IPPELLFTHEQLTRRRRKVEEESYENEKSDDYDETSKIPENDDEELGPKFLDMYSSIYSM RQDLDRMKKPIGSRENPGRTCKDLHFGHPHYRDGWYWIDPNLGMPDDAVYVYCNMTASGE TCVFPDIHSSQMPNIPWKKEKGKNEWYSKLRGGFRITYETIGVVQMTFLRLLSEEGYQNF TYTCTNSAAWSGPSGHDKNVSMKLLGFNEAEFSYNRTRPQVLIDGCKSRKDNSETVFLIK TNKLQQLPLIDFYPVDYGLPHQAFGFSTGPFCLK NT seq 5325 nt NT seq  +upstreamnt  +downstreamnt atgcgatttgacgacacaaaacgatcatggaaaacgagacgcctcgtcgtccgcattacg aaaaaatgtatattattacaagtcctcgttatggcaatagtttacttgcaaatgcgcggt gtcgaagcggagttcacgaacctgggtcaaggaattgtcgatctgctggaaagcacagga atgcacgaggagccaactggagtcaccccgaaaaagagtcgttgtggatacaatggaaca actgcttatgagattggtgaagctgcattacttacggcaaacacgataacgctctttcct catggttttccacaagatttctccatcctcatagtggcgaagccgaaactcgattctcct gcatcaacattgttcactgtatacagtgacaacggtgaagaacaattggtagtttcactg ggaaacgatgttacacttttgtataacacggtgctcgatgaaattctcaatccaatttca tttggtatcaacgttgctgacggcaactggcatagattgggattcagcttgaaaggcgat gctgtgacccttatcactgatcaagaaacacaaattacacgtgaactccgaagggataca acaacaacgataactactagtggaattataataattgggcaacaacttgtcgatggatat ttgtacatgggtgaaattgagatgctcaagattgcgccgacccccgattctgcgtatgaa attacgactgttttcgctcccgattgtgaatcaagatcagggagattcaacgtttccgcg gcgacgttttcgactattcatattccgcccggtgaagagtcgctggagtacgagcggcgt tcacggcaaaggtatggttcgtcgatacgaaatttgactggcagctttgatgatcgagtt tcgcgaaacgctacgagagtttcgtttgacgctgattatgacgacgaagatgaacttacc gaaggtcctacggcggaagatgacgatgacgaagaatatgctaccggtgaaccaaacatt gagaccaatccacttccgaccgcttcacatgccttttctgcgatacgaggcagttttatt cactcgggagcagcgtcacttccggattattctacgatcacatcgtacgagggggaagag caggatggtaaattaccgacggactcgccttcgatctcgagtagtgagggatcgtactat acgaattatgggtactacaatgtccgtggtccgtcaggacctcgaggctttcctgggcct cctggagtccccggagttcaaggccaaaagggagaaccaggtcgtgatggactcggagga acggagggtgctccaggaccaccgggccacgtgtttatgattccattgaaccagcagggc aacgaaaaaggaccggacgcgcaggcagatatgcttagacaattgttgtcgcaacacatg ctggcaatgcgaggtatagaaggaccgatgggactcaccggtgtttccggaccggacggt ccaccgggaccacagggacaaaaaggcgaccctggtgacattggagaacctgggcctcga ggggaagcaggtccaataggaaatcctgggcgtgaaggaaaacgaggtagacctgggaga gacggtgatcgaggggttactggacaacgcggtgtaaagggtgaacagggactgccaggg ttgcctggtttaccgggtgataaaggtgaaagaggatctactggtgccgttggagagcaa ggattaccaggtcacgaaggcttacaaggtgatgatggtccacccggattagtcggtttg ccaggagaaatggggccaagaggctttgtgggtccacgaggatttcctggtttacctggc aatcctggaattccaggaagtgaaggaccacctggcccgaaaggcagtactggatcactg ggaccaccgggacaagccggacaaaatggccctacaggacctgttgggcctcctggtcct caagggcctttaggaccaactggcttagttgggcctcaaggcaaacctggtattccaggt ctccctggagcagatgggtctccaggacatccagggaatcctggtggcccaggaatgaag ggtgatcaaggtctgcaggggcctcagggtgcgataggctttcctggagttcgtggaatg aaaggggatgaaggtaaacgcggcgcagccggagatcgcggtgataagggtgaaccaggc tcggaaggtgataagggagatatgggggccaaaggggaagtaggacctcccggaccccaa ggtattcctggtctggaaggactcgaaggcatgaaaggaatggaaggcccacgtggtgaa actgggtcaactggtccacctggtgagaaaggaaaaattgggattcctggcttccctgga tacccgggcaacattggagacaagggtgacaaaggacaaaccggtcggcaaggatcagtg ggtgataaaggagaaagagggcatgcgggatcacctggagaacgcggagaagtcggtcca cggggatttagaggagcccgaggtagaagaggatctgaaggaacgcctgggccaaaaggt gatactggccaaccaggaagcccaggaccccaaggcgaacagggattaccggggatagaa ggaccgcggggattcgccggtcctccaggtccagctgggctcgatgggaaagatggaatt gctgggcctcctggtgagcgtggtcctgtaggggaatccggtcctcccgggccatctggc atacctggagtcgtaggtcctcctggaccggccggtgaggctggacagccgggagaaggc ggtcaaccgggaagccaaggcgcacctggtgagcccggacctcccggcgacaagggcagt gagggaccacacgggccgccaggaccgcccgggaaagatggacccccaggtaccggtggt ctacctgggtttcctggagatagaggacttgatggagcgactgggatgccagggttgaaa ggggaaatgggaatcccgggtcctccgggtccaacaggcgacaaaggtgctcaaggggag ccgggaaaagacggcacgatcggtccagaaggacgttcagggccgaacggtcctcccggt cctgtcggaccgaaaggcgagatgggtgaacctggtaatgctggacctatagggagagat ggcttacccggacagcgtggtttaccaggagcaccaggacctataggtgtgcctggtgaa gacggtgataaaggtgaacttggtttaccaggggaaaaaggtttaaaagggtcacgaggt gaaattggtccaccaggcccgcctgggtcgcaaggggtgagaggtgaaccaggtctgaca ggtcaacccggtgaaaagggacctccgggtgaaattggcagacggggcactaaaggagaa gatggaccagttggcgtaccaggctcagcaggtcctatagggctgcagggattgccaggt cctccaggattgaaaggtgaaatgggtgatactggagcagtggggcttgctggaccacca ggttcacctggagagcaaggtccaaggggaatcaagggtgtcgaaggaactcaaggacct gtcgggcctgaaggtcaaatgggtgccaagggagatactggaaatccgggaccaccagga acgccaggcactgaaggaaaacctggaaatttgggtgcaccgggaccgaaaggagaagat ggtaaaaccggtcctgctggatcacctggtgaacggggaatccctggcccagaaggtccg aaagggaaccttggtcctccaggatttcccggtccacccggagaaactgggcttccgggt ggcaaaggcgagagtggcaaagatggcgacgatgggcctcccggtgaaccaggaccttcc ggtgaaattggaccacctggaaaagaaggcgctgccggcactccgggaaaacctggtaca gaaggtccagcaggcttacaaggccatccgggtcttcccggtgaaccaggtgatcctggt tcacttggtcctattggaaatccggggcctccgggaatacaagggccgccaggtcccaag gggtcgcaaggactgactggccagcctggtgtatccggagaaaatggcgctccaggaatg cctggtagcgaaggtgcccctggtgcagttggtcctgctggtccaaaaggacagcgtggc gaccgtggacgcagaggaatgaaaggtcatcgtggtgacatcggtcatgttggtatcaag ggggatcaaggggaaaaaggtgagaaaggcatgagaggagttttcggactggaagggcca aaaggcagccctggcccacatggtcctgaaggagtgaagggtaacgacggacctccgggc ctaccgggaatggagggaccaccaggaatgaagggaattatgggaaatgacggtatgaag ggcgatgtgggtccaccggggccaccaggccctcctggtcctccggcagagcagccaatg attcctccagaattactgtttacccatgaacagttgacccgaaggcgacgtaaagtagaa gaggaaagttacgaaaatgagaaaagcgacgattacgacgaaacatcaaaaataccagaa aacgatgacgaagagctgggtcctaaattcttagacatgtacagctcaatatactccatg agacaagatttggaccggatgaaaaagcctatcggtagtcgagaaaatccaggcagaacg tgtaaagatcttcattttggacatccccattatcgtgacggatggtattggatagaccca aatctcgggatgcccgatgatgctgtttacgtttactgcaatatgacagcgtccggagaa acgtgtgtttttcctgacattcacagtagtcaaatgccaaacattccatggaaaaaggaa aaaggaaaaaacgagtggtattcgaaactccgcggtggattccggatcacctatgaaact atcggcgtcgtacaaatgactttcttgaggcttctgagcgaggaaggatatcagaatttc acctacacctgcaccaatagcgcagcatggtcaggcccatccggtcacgataaaaatgta tcgatgaagttgcttgggtttaatgaggcagaattttcgtataatcgaacacgtccccaa gttttgatcgatggatgcaagagtcgaaaggataatagtgaaactgtcttcctcattaag acgaacaagctccaacaattgccgctcattgatttttatccagttgattacgggctgcct catcaagcattcggtttttccactggtccattttgtttgaaatga

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