Vibrio cyclitrophicus: FAZ90_04930
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Entry
FAZ90_04930 CDS
T06393
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
vcc
Vibrio cyclitrophicus
Pathway
vcc02020
Two-component system
vcc02024
Quorum sensing
vcc05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FAZ90_04930
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FAZ90_04930
05111 Biofilm formation - Vibrio cholerae
FAZ90_04930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vcc02022
]
FAZ90_04930
Two-component system [BR:
vcc02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
FAZ90_04930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
HTH_8
AAA_5
Mg_chelatase
AAA_16
AAA
AAA_2
AAA_19
HTH_29
AAA_22
TIP49
HTH_23
PIF1
HTH_7
Motif
Other DBs
NCBI-ProteinID:
QCI70439
LinkDB
All DBs
Position
1:1021313..1022701
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AA seq
462 aa
AA seq
DB search
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILL
DLRLPDMTGMDVLFAVKQKYPEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRI
TVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFITGESGTG
KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRF
REDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEW
PGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSLRLKEMQNEDITVKDIFPLWI
TEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcaaaaacgctagataacaaatcaaagtatttgttgatggtggaggatacggct
tcggtcgccgctttatatcgctcgtatcttacaccgctcgaaattgatatcaacattgtc
ggcacaggtcgcgatgcaattgagagtttgaatcatcgaatccctgacctcatcttatta
gatctgcgccttcctgatatgacgggtatggacgtactatttgctgtaaaacaaaaatac
ccagaagtccccgttatcttcatgacggctcacggctctatcgataccgcagtagaagcc
atgcgtcatggttctcaagatttccttattaaaccttgtgaagccgatcgactccgtata
acggtgaataacgcgatacgcaaagccactaaactgaagaacagttctgaaaacccgggt
aatcaaaactatcaaggattcatcggtagtagccaaaccatgcagcaggtttatcgaact
atcgattccgcggcatcgagtaaagcgagtattttcattaccggtgaaagtggtaccgga
aaagaggtgtgtgcagaagcgattcacgcggcgagtaagcgtggtgataagccattcatt
gcgattaactgtgcggctattcctaaagatttaatcgaaagtgagctgtttggtcacgta
aaaggtgcctttactggcgctgcaaccgatcgtcaaggtgcggctgaacttgccgatggt
ggaaccttgttcctcgatgagttgtgtgagatggatcttgagctacaaaccaagcttttg
cgttttattcaaacgggtactttccaaaaagtaggctcttcgaagatgaagagtgtggat
gttcgttttgtatgtgcaaccaaccgagacccttggaaagaagtccaagaaggtcgcttt
agagaagatttatactaccgtttatatgtaattccactgcacctaccgccattgcgtgag
cgtggcgaggatgttatcgagattgcatattcactgctgggctacatgtctgttgaggaa
ggtaaggcctttgttcgttttgctcaggaagtgctggaccgctttaaccaatacgagtgg
ccgggtaacgttcgtcagctacaaaatgtgttgcgaaacgtggtggtactgaacaatggt
aaagagattaccctgaacatgcttccacctccactgaaccagccgattgagagcagtctg
cggttgaaagagatgcaaaatgaagacatcactgtaaaagacattttcccattgtggatc
actgaaaaaacagcgattgaacaggccataaaagcatgtgatggcaacatccctcgtgcg
gcaggcttcttagatgtcagtccatcgacgatatatcgtaagttacaaacgtggaatgcg
aagcagtag
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