Volvox carteri f. nagariensis: VOLCADRAFT_107778
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Entry
VOLCADRAFT_107778 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K18758
DIS3-like exonuclease 2 [EC:3.1.13.-]
Organism
vcn
Volvox carteri f. nagariensis
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_107778
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VOLCADRAFT_107778
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
Fan1_SAP
Motif
Other DBs
NCBI-GeneID:
9627133
NCBI-ProteinID:
XP_002957710
JGI:
107778
UniProt:
D8UGB4
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MTSSTVDQQVRKMAPLYPETNYHASTRRQTDRTTFSSTRTHPMFESLSRWMNFGNDPAYQ
AALDAATRSSVLAAPSQTPTFAPSLSPPPPPPTTQPHETSPSLELGPRSRGSGGGAPASQ
PLPHVTSGAGSGHAAGSSIGMQARGDRRSQQQPQQPQQQERRQPRDTASGVVSQRSGSGS
EAVAAAEAQLSRTRLEAGRTRSGSRTDEAGGVNQTGAGGARKESGWFGSYHVGLWGMGEH
LSPGDLSAGLKSGRLFRGRIRINPGNTAEAYVTVPGLPHDLLVRGELSRNRAVEGDEVAV
QVQPPTAWFVKNKGSQQQQQQQQQQKQQAAAGTQATGRGSSEEAPWQSCTSPDQVKQVMC
DLLAARSELRATAKVVAVLDPSPKRSQLVGLLRLVGRLPDTSLPSWDPSRDGAAMPGPLN
AAVEAARAAALQLHLVPLDPRLPTCRVEADKVYNLSPALLVGLLRGEQTASRTLVSALLL
SWPPASQQPLAGLRSSLGQAGEIESETAAILEGQGIRATDFEPQVLACLPPLPWRIGERD
LAGRRDFRSQRVFSIDPPTAKDLDDALSIEPLTGGGPEAAEGAAWRVGVHIADVSHFIEP
FSALDVEAGLRSTSTYLVQRVVPMLPPLLCEQLCPLNPGEDRLTCSVVWDMDKHGNILST
WFGRSVIRSCAKLTYPLVQKMIEGEFHAEDTGVPLHGEGVSWEQEANQLVEEFMVLANIS
VAKFISQVFPDRAMLRRHPPPNDTKMQELREAAEAAGVELNVSSAAALQTTLNALRASAP
PPPPPAGEGEGEGEGGREGGAGLLSAAARHRRKVELLVMLATRPMQLAKYFSTGSLDEAQ
WLWRHYALAIDHYTHFTSPIRRYPDVVVHRQLAAALDVTQGGLSVEEAARKHRLLDPALT
DRVAEHCNERRLAARDAQDASLRLYLCVLLARQPRIVLGTVNGLGGNLFFSAYLSEFGTE
VTVVLGKTGVPLTAEWNQGAKVLTLTRGSQPQLDGGELPQGAGALGRKQRSQGGSGAGSG
GGRGGGRRGQQSRQGSGSGGGGGGNGGGGNGSNSDSSLSLVEWVESLPPVCNPYGLQPVS
VPLHLRQFDDVPLLVTAELVAGEAPRLVARMYLREAESAVEESSRRRGAEEEEAAAAGAA
ATAAEAVAEGPVVEETEGGIGTAVRQSMVPWDNMLMD
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgacgagttcgacagtcgatcagcaagtacggaagatggctccactctatccagaaacc
aactatcacgcaagcaccaggcgacagactgaccggacaacattttcctcaacacgtaca
catccgatgtttgaaagcttgtcgaggtggatgaactttggcaacgaccccgcgtaccag
gccgccctggatgcagccacccggagctccgtcctcgcggccccctcccaaacaccaacc
ttcgcaccttcactatctcccccgccaccaccacccaccacccaaccgcacgaaacaagc
ccctccctggagctaggccctcgcagccgaggatctggcggtggtgcgcccgcgtcccag
ccgcttccccacgttacatccggggctggcagcggccatgcagccggcagctctatcggc
atgcaggcgcgcggtgaccgccggagccagcagcagccgcagcagccacagcagcaagag
cggcggcagccccgggacacagccagcggtgtggtctcccagagatcagggtcgggatct
gaggctgtggcggctgcggaggctcagctgtccaggacgcgcttggaggctgggaggacg
cggtcgggatcgaggacggacgaggccgggggggtgaatcagacgggcgccggtggggcg
aggaaggaaagcggatggtttggatcctaccatgtgggtttgtggggtatgggggagcac
ctgtccccgggggacctatccgccggtctcaagagcgggcggctgttccgggggaggata
cggatcaacccggggaacacagcggaggcctacgtgacggttcccggcctcccccacgac
ctgctggtccgcggtgaactgagtcgcaatcgggcagtggagggggacgaggtggcggtg
caggtgcagccgcccactgcctggttcgtgaagaataagggaagccaacagcaacaacaa
cagcaacagcaacagaagcagcaggccgctgcgggcacacaggccacgggtcgcggttcc
agcgaggaggcgccatggcagtcctgcacctcccccgaccaggtcaagcaggtcatgtgc
gacttactggcagcgaggtcagaacttagggcgacagccaaggtggtggccgtcttggac
ccctcccccaaacgcagccagctggtggggctgctgcgcctggtgggccggctgccagac
acatccctgccctcctgggacccctccagggatggtgcagccatgccggggcccctcaac
gcggccgtggaggcggcgcgggcggccgctctgcagctgcaccttgtgccgctggacccc
cgcctgccgacgtgtcgtgtggaggcggacaaggtgtataacttgtcaccggcgttgctg
gtggggctgctgaggggggagcagacggcgagcaggactctggtctccgccctgctgctc
agctggccgcccgccagccagcagcccctggccggtctgcgctccagtctgggccaggcg
ggggagatagagagcgagactgccgccatactggaggggcagggcatccgagcgacggac
ttcgagccccaggtgttggcgtgtctgccccccctcccctggaggattggtgaacgggat
ctcgccgggaggagagacttccgctcccagcgtgtgttctccatcgacccccccactgct
aaggatctcgatgacgctctgtccattgagccgctgaccggcggggggcctgaggcggcg
gagggagccgcctggcgcgtgggggtccacatcgcggacgtctcccatttcattgagccg
ttcagcgctctggacgtggaggcgggcctgcggtccaccagcacgtacctggtccagcgg
gtagtgcccatgttgccgcccttgctgtgtgagcagctgtgccccctcaatccgggggag
gacagactgacatgcagtgtggtgtgggacatggacaagcacggcaacattctgtcaacg
tggtttggtcgcagcgtcattcgctcctgcgccaagctgacttacccgctggtccagaaa
atgatcgagggggagttccacgcggaggatacgggtgtgccacttcacggggagggagtg
agctgggagcaggaagccaaccagctcgtggaggagttcatggtgttggcgaacatcagc
gtagccaagttcatatcccaggtgtttccggatagggccatgctgaggcgccaccctccc
ccaaacgacaccaagatgcaggagcttcgggaggcggccgaggcggccggagtggagctg
aatgtgtcgtcagccgcagccctgcagaccaccttgaatgcgctgcgggccagtgccccc
ccgcccccaccgccggcaggagagggggagggggagggggagggggggagagagggcggt
gcggggttgttgtctgccgccgctcgccaccgtcgcaaggtggagctgctggtgatgttg
gccacccggcccatgcagcttgccaagtacttcagcacggggagcttggacgaggcgcaa
tggctgtggaggcactatgccctggctatcgaccactacacgcacttcacctcccccatt
cgccgctacccggacgtggtagtgcaccggcagctggcggcggcgctggacgtgacccag
gggggcttgagtgtggaggaggcggccaggaagcaccgcctgctggacccggctctgaca
gaccgtgtggcggagcactgcaacgagcgccgtctggccgcccgtgacgcccaggacgcc
tccctgcggctctacctgtgtgtgctgctggcccgccagccgcgtattgtcctgggcacc
gtcaacggcctgggcggaaacctcttcttctccgcctacctctccgagttcgggaccgag
gtcacggtggtgctgggcaagacgggtgtgccgcttacggcggaatggaaccagggtgcc
aaggtgctgacgctgacccgcgggtcacaaccgcagctggacggcggcgagctgccgcag
ggcgccggcgctctcggccggaagcaacgcagccaaggtggtagtggtgctggtagtggt
ggtgggcgaggtggtgggcgacggggtcagcagagccggcagggctctggttcaggtggt
ggtggtggtggtaacggtggtggtggtaacggtagcaatagtgatagcagtcttagtttg
gttgagtgggtggaatcgctgcctccggtttgtaacccgtacggtttgcagccggtatca
gttccgctgcacctgcgccagttcgacgacgtgccgctgctggtgacggcggagttggtc
gcgggggaggcccccagactggtggcacggatgtacctgcgtgaggcggagagcgccgtg
gaggagagcagcaggaggaggggagcggaggaggaagaggcagctgcagccggagcagct
gctacagccgcggaggcggtggcggaggggccagtggtggaggagactgaggggggtatt
ggtacggcggtacggcagtccatggtgccctgggacaatatgctgatggattga
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