Volvox carteri f. nagariensis: VOLCADRAFT_116706
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Entry
VOLCADRAFT_116706 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VOLCADRAFT_116706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcn03019
]
VOLCADRAFT_116706
Messenger RNA biogenesis [BR:
vcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
VOLCADRAFT_116706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
TPR_14
TPR_19
EthR_C
MTH865
Motif
Other DBs
NCBI-GeneID:
9625110
NCBI-ProteinID:
XP_002948132
JGI:
116706
UniProt:
D8TP08
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MDRDRERGRGGGRPGPSPGQLLDKVRQLRAKISQDVYDLTGWDQAWEELKSLQLSDETRA
IYEELVAAFPTKADVWCKYSELELAAGNLPGLKAIFQRCLMAVPSLELWALYMKFIRRSN
KSKGADGVVEIRNALEFTLERAGQDINSGPFWQDLLQLLQSAKAGTPEFGALFPQAMVGQ
EDNARMAAVRRVYQQAVTIPHHHLDGLWRDYQRFENDGPNKQFAKKVLDEWSPKYQAAKA
VYRERRKRAAVLSYALWPLPSGKGGLLQDQQAQLWREYLAYERTNPQGLDPPVLLSRVSL
AFDQALICFLYFPDFWLEYAEWHTSCGRPDAAGSALTKGQAALPQCLQLRMLAADLAERT
GSPEQAVAIYEGLALNLEQQQAVTRGSLPAAEGELVWVQYMQLLRRVEGDFHSRKLFLRA
RKWHLGLPAGEHGCWRLYADAALLEWRRGRDAAAARNIFEKGLEDTRIFREPQYAIAYLD
LLCGLGDLDNARALLARVLGDETNAKCVTLWQRYIAFEGMSGDLAAVVEVERQAMAALRG
EEAEQLKSALPLIRCHGDGSGAVGGGGGSGPPGSNIRPPSAYTYSGAAAAGQEPQPLKQL
PPQLGLFINSLPPPQAVEGIVPDVDQVIEALLTMDLTAGTVLQVCLDLESGKTLAHMGQP
QQGGPPPDQPPYPHGHPHMQQEPPGPHFGRPEPGGPPYGGPPGPYGYGQGSPGPGPRGGG
GGGGGYSEPYGDGPPGGPDEYGKRRYQYGYDPNEGGEDDGYDNGYGGGRDLYHQRLRRRM
DQ
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgaccgcgagcgggggcggggcggcgggagacctggaccatctccgggacag
ctgctggacaaggttcggcagctgcgggcgaaaatttctcaggacgtgtatgatctgact
ggttgggaccaggcgtgggaggagctcaagtccttacagctatcggacgaaacacgggcc
atatatgaggagctggtcgcagcgttccccacaaaggctgacgtatggtgcaagtattcg
gagctggagctggctgccggcaacctgccgggcctcaaggcgattttccagcgctgcctc
atggcggtgccctccctggagctgtgggccctgtacatgaagttcattcgcagatccaac
aagagcaagggcgcggatggcgtggttgagattcgcaacgcgctggagttcactttggag
cgggcgggtcaggacatcaactcggggcccttctggcaggacctgctgcagctgctgcag
tccgccaaggcggggacaccggagttcggggcgctctttccgcaggcgatggtgggtcag
gaggacaacgcccgcatggcggctgtacggcgtgtttaccagcaggccgtcaccataccc
caccaccacctggatgggttatggcgggactaccagcgcttcgaaaacgatgggcccaat
aagcagttcgcgaaaaaagtcctagatgagtggtcccccaagtaccaggcggccaaggcg
gtgtaccgggagaggaggaagagagcggcggtgctcagctacgcgctgtggccgctgccc
tccggcaagggggggttgctgcaggatcagcaggctcagttgtggagggagtacctggca
tatgagcgtactaacccgcagggtttggatcccccggtgttgctgtcccgtgtatccctg
gccttcgaccaagcactcatctgcttcctctacttcccagacttttggctggagtatgcg
gagtggcacacctcctgtggccgccccgatgctgccggatcggcattgaccaaggggcag
gccgctctgccgcaatgcctgcagttgcgcatgctcgcggccgatctggccgagcgtacc
gggtcgcccgagcaggcggtggccatttatgagggcctggcgctgaacttggagcagcag
caggcggtgacccgtgggtcacttccggctgcggagggggagctggtttgggtgcagtac
atgcagctgttgcggagggttgagggagacttccacagccgcaagctcttcttgcgcgcc
cgcaagtggcatctgggcctcccagctggcgagcacggctgctggcggctgtacgcggat
gcggcgctgctggagtggcgccggggacgggacgcagcggcagcccgcaacatcttcgaa
aagggtctggaggacacccgcatcttccgggaaccgcagtacgcaattgcgtacctggac
cttctttgtggacttggtgacttggacaacgcgcgcgccctgcttgcccgcgtgctgggg
gatgagaccaacgccaagtgcgtgacgctgtggcagcgctacatcgcctttgagggcatg
tcgggtgacttggcggcggtagtggaggtggagcgacaggcgatggcggcccttcgcggg
gaggaggcggagcagcttaagtcggcgctgcccctcatacggtgccacggcgacggaagc
ggcgcggttgggggcggcggcggcagcgggccgcctggctccaacatccggccgccctcc
gcctacacctactcaggcgcggcggctgccgggcaggagccgcaaccgctgaagcagcta
ccacctcagttggggctcttcatcaactccttgccgccaccgcaggctgtggagggtatc
gtgcccgatgtggaccaggtcattgaggcactgctcaccatggacctcacggcagggact
gtgctgcaggtgtgcctggatctggagtccggcaagacgttggcgcacatgggccagccg
cagcaagggggacccccacccgaccagccgccctacccgcatggccatccgcatatgcag
caggagcctccgggaccgcacttcggcaggccggagccaggggggccgccgtacggcggt
ccgccgggaccctacgggtacggccaagggtcccccggaccgggaccgcgcggtggtggc
ggtggcggcggcggctactctgaaccatatggcgatggtccaccgggcgggcctgacgag
tacgggaaacgacgatatcagtacggctacgatccaaacgaaggcggtgaagatgacggt
tatgacaacgggtacggcggcggacgagacttataccaccagaggttacggcggcggatg
gaccaatga
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