Volvox carteri f. nagariensis: VOLCADRAFT_83047 Help Entry VOLCADRAFT_83047  CDS       T01330                                  Symbol lig1 Name (RefSeq) ATP-dependent DNA ligase   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism vcn  Volvox carteri f. nagariensis Pathway vcn03030   DNA replication vcn03410   Base excision repair vcn03420   Nucleotide excision repair vcn03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vcn00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     VOLCADRAFT_83047 (lig1)    03410 Base excision repair     VOLCADRAFT_83047 (lig1)    03420 Nucleotide excision repair     VOLCADRAFT_83047 (lig1)    03430 Mismatch repair     VOLCADRAFT_83047 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vcn03032]     VOLCADRAFT_83047 (lig1)    03400 DNA repair and recombination proteins [BR:vcn03400]     VOLCADRAFT_83047 (lig1) Enzymes [BR:vcn01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      VOLCADRAFT_83047 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      VOLCADRAFT_83047 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      VOLCADRAFT_83047 (lig1) DNA replication proteins [BR:vcn03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     VOLCADRAFT_83047 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      VOLCADRAFT_83047 (lig1) DNA repair and recombination proteins [BR:vcn03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      VOLCADRAFT_83047 (lig1)    NER (nucleotide excision repair)     Other NER factors      VOLCADRAFT_83047 (lig1)    MMR (mismatch excision repair)     Other MMR factors      VOLCADRAFT_83047 (lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  9622077 NCBI-ProteinID:  XP_002955063 JGI:  83047 UniProt:  D8U8W1 LinkDB All DBs Position Unknown AA seq 648 aa AA seqDB search MEGVGTGAVAAATKYAEADITKLITWKKGTPVPYSLLANTFEAIAGTSKRLEIVAHLVAA FRAVLDTNPPDLLPAVYLCVNRVAPSHTGIELGIGEATLIKALCEATGKNEAGIKKAYEA SGDLGVVAVGARSTQRTMFTPPPLTIANVLKGFRDIAQVAGSKSVDIKRGMIVKMLVAAK GNEPGYIIRSLQAKLRIGLAEQSVLVALAHAVHLHREGVKDKDGRLAEKLEAAAQVVKQA YSECPSYDVLIPALLEQGTADLLSRCHFMPGVPVKPMLAKPTTGVGEVLEKFTDTEFTVE YKYDGERAQVHVMEGGKTVHIFSRNAENNTPKYPDIVARLRGLLKPHVQSIVFDSEAVAY DPEKKKILPFQVLSTRARKDVSVGEIKVQVVLFAFDCLYLNGESLLHKPLTERREALYGA LMEKEGQLQFATAKTSRDVEELESFLTESVEAGTEGLIVKTLADTYEPSKRSSHWLKLKK DYMEGVGDTFDVVPLGAFYGKGKRTGFFGAYLLGVYDPDTETYQTISKLGTGFSEEQLQQ LADSMRPHIIPQPRPYYKWSDALVPDVWFDAVAVWEVKAADLSISPVHKAAVGLVDPSKG ISIRFPRLIRVREDKSPEDATSAAQVAEMFRSQAVIKQQQVGYGCLWV NT seq 1947 nt NT seq  +upstreamnt  +downstreamnt atggagggtgtgggtacaggcgccgtagccgccgcgaccaagtacgcggaggccgacatc acgaagctcattacctggaagaagggcaccccagtgccatactcactgctagcaaacact ttcgaggccatcgcggggaccagcaagcgactggagattgtggcccacctggtggcggcc ttccgggctgtactggacaccaatccacccgacctgctgccggcagtctacctgtgcgtt aaccgagtggcaccgtcacacaccgggatagagctgggcatcggagaggcgaccctcatt aaggcgttgtgtgaggccactggcaagaacgaggcgggcattaagaaggcgtacgaggcc agcggcgacctgggagttgttgctgttggtgcgcgcagcactcagcggaccatgtttact ccgccgccgctcaccattgccaacgtgctcaagggcttccgagacattgcacaggtggct ggcagcaagagcgtggacatcaagcgcggcatgattgtcaaaatgctggtcgcggccaag ggtaacgagccgggttacatcatccgctcgctccaggccaagctgcgtatcgggctggct gagcaaagcgtgctggtggcgctggcccacgctgtgcacctgcatagggagggtgtcaag gacaaggacggccgcctggcggagaaactggaggcggcggcgcaggtggttaagcaggca tacagcgagtgcccgtcctacgacgtgctcataccggcgctgcttgagcagggcaccgcc gacctgctgtcccgctgccacttcatgccgggagtgccagtcaagcccatgttggcaaag cccacgacaggtgtgggagaggtgctggaaaagttcaccgacacagagttcactgtggag tacaagtacgacggcgaacgggcacaggtgcacgtaatggaaggaggcaagaccgtacac atcttcagcaggaacgccgagaacaacacgcccaagtacccggatatcgtggcgcggctg cggggtctgctcaagccgcacgtccagtccatcgtgttcgatagcgaggcggtagcttac gacccggagaagaagaagattttgccctttcaggtgttgtctacgcgcgctcgtaaggac gtgtccgtgggtgagatcaaggtgcaggtggtgctgttcgcctttgactgcctctacctc aacggcgagtcgttgctacacaagccgctgacggagcgtcgcgaggcactgtacggcgcg ctcatggaaaaggagggacagctgcaatttgcaacggccaagaccagtcgggacgtggaa gagttggagagcttcctgaccgagtctgtggaggcaggtacggagggccttatcgttaaa acgctcgcggacacgtacgagccgtccaagcgctccagccactggctcaaacttaagaaa gattacatggagggtgtcggggatacgttcgacgtggtacctctgggcgcattctacggc aagggcaagcggactggattttttggagcctacctgcttggcgtgtacgacccagacacc gagacgtaccagactattagcaagcttggcaccgggtttagcgaggagcagctgcagcaa ctggcggactccatgcggccgcacatcatcccgcagccccgcccgtactacaagtggagc gatgcgctggtgcctgacgtgtggttcgacgcggtggcggtgtgggaggtcaaggctgcc gacctgtccatcagtcctgtacacaaggcggcagtgggcctggtggacccgagcaagggc atcagcatccgatttccacggttaatccgtgtgcgcgaggacaagtcaccagaggatgcc actagtgcagcgcaggtagcggagatgttccgctcgcaggcggtcatcaagcagcagcag gtgggttatggctgcttgtgggtgtga

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