KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_83047Help
Entry
VOLCADRAFT_83047  CDS       T01330                                 

Gene name
lig1
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:vcn00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    VOLCADRAFT_83047 (lig1)
   03410 Base excision repair
    VOLCADRAFT_83047 (lig1)
   03420 Nucleotide excision repair
    VOLCADRAFT_83047 (lig1)
   03430 Mismatch repair
    VOLCADRAFT_83047 (lig1)
Enzymes [BR:vcn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VOLCADRAFT_83047 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     VOLCADRAFT_83047 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VOLCADRAFT_83047 (lig1)
DNA replication proteins [BR:vcn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VOLCADRAFT_83047 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VOLCADRAFT_83047 (lig1)
DNA repair and recombination proteins [BR:vcn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VOLCADRAFT_83047 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     VOLCADRAFT_83047 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     VOLCADRAFT_83047 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
Unknown
AA seq 648 aa AA seqDB search
MEGVGTGAVAAATKYAEADITKLITWKKGTPVPYSLLANTFEAIAGTSKRLEIVAHLVAA
FRAVLDTNPPDLLPAVYLCVNRVAPSHTGIELGIGEATLIKALCEATGKNEAGIKKAYEA
SGDLGVVAVGARSTQRTMFTPPPLTIANVLKGFRDIAQVAGSKSVDIKRGMIVKMLVAAK
GNEPGYIIRSLQAKLRIGLAEQSVLVALAHAVHLHREGVKDKDGRLAEKLEAAAQVVKQA
YSECPSYDVLIPALLEQGTADLLSRCHFMPGVPVKPMLAKPTTGVGEVLEKFTDTEFTVE
YKYDGERAQVHVMEGGKTVHIFSRNAENNTPKYPDIVARLRGLLKPHVQSIVFDSEAVAY
DPEKKKILPFQVLSTRARKDVSVGEIKVQVVLFAFDCLYLNGESLLHKPLTERREALYGA
LMEKEGQLQFATAKTSRDVEELESFLTESVEAGTEGLIVKTLADTYEPSKRSSHWLKLKK
DYMEGVGDTFDVVPLGAFYGKGKRTGFFGAYLLGVYDPDTETYQTISKLGTGFSEEQLQQ
LADSMRPHIIPQPRPYYKWSDALVPDVWFDAVAVWEVKAADLSISPVHKAAVGLVDPSKG
ISIRFPRLIRVREDKSPEDATSAAQVAEMFRSQAVIKQQQVGYGCLWV
NT seq 1947 nt NT seq  +upstreamnt  +downstreamnt
atggagggtgtgggtacaggcgccgtagccgccgcgaccaagtacgcggaggccgacatc
acgaagctcattacctggaagaagggcaccccagtgccatactcactgctagcaaacact
ttcgaggccatcgcggggaccagcaagcgactggagattgtggcccacctggtggcggcc
ttccgggctgtactggacaccaatccacccgacctgctgccggcagtctacctgtgcgtt
aaccgagtggcaccgtcacacaccgggatagagctgggcatcggagaggcgaccctcatt
aaggcgttgtgtgaggccactggcaagaacgaggcgggcattaagaaggcgtacgaggcc
agcggcgacctgggagttgttgctgttggtgcgcgcagcactcagcggaccatgtttact
ccgccgccgctcaccattgccaacgtgctcaagggcttccgagacattgcacaggtggct
ggcagcaagagcgtggacatcaagcgcggcatgattgtcaaaatgctggtcgcggccaag
ggtaacgagccgggttacatcatccgctcgctccaggccaagctgcgtatcgggctggct
gagcaaagcgtgctggtggcgctggcccacgctgtgcacctgcatagggagggtgtcaag
gacaaggacggccgcctggcggagaaactggaggcggcggcgcaggtggttaagcaggca
tacagcgagtgcccgtcctacgacgtgctcataccggcgctgcttgagcagggcaccgcc
gacctgctgtcccgctgccacttcatgccgggagtgccagtcaagcccatgttggcaaag
cccacgacaggtgtgggagaggtgctggaaaagttcaccgacacagagttcactgtggag
tacaagtacgacggcgaacgggcacaggtgcacgtaatggaaggaggcaagaccgtacac
atcttcagcaggaacgccgagaacaacacgcccaagtacccggatatcgtggcgcggctg
cggggtctgctcaagccgcacgtccagtccatcgtgttcgatagcgaggcggtagcttac
gacccggagaagaagaagattttgccctttcaggtgttgtctacgcgcgctcgtaaggac
gtgtccgtgggtgagatcaaggtgcaggtggtgctgttcgcctttgactgcctctacctc
aacggcgagtcgttgctacacaagccgctgacggagcgtcgcgaggcactgtacggcgcg
ctcatggaaaaggagggacagctgcaatttgcaacggccaagaccagtcgggacgtggaa
gagttggagagcttcctgaccgagtctgtggaggcaggtacggagggccttatcgttaaa
acgctcgcggacacgtacgagccgtccaagcgctccagccactggctcaaacttaagaaa
gattacatggagggtgtcggggatacgttcgacgtggtacctctgggcgcattctacggc
aagggcaagcggactggattttttggagcctacctgcttggcgtgtacgacccagacacc
gagacgtaccagactattagcaagcttggcaccgggtttagcgaggagcagctgcagcaa
ctggcggactccatgcggccgcacatcatcccgcagccccgcccgtactacaagtggagc
gatgcgctggtgcctgacgtgtggttcgacgcggtggcggtgtgggaggtcaaggctgcc
gacctgtccatcagtcctgtacacaaggcggcagtgggcctggtggacccgagcaagggc
atcagcatccgatttccacggttaatccgtgtgcgcgaggacaagtcaccagaggatgcc
actagtgcagcgcaggtagcggagatgttccgctcgcaggcggtcatcaagcagcagcag
gtgggttatggctgcttgtgggtgtga

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