Verminephrobacter eiseniae: Veis_0304
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Entry
Veis_0304 CDS
T00460
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Veis_0304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vei03400
]
Veis_0304
DNA repair and recombination proteins [BR:
vei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Veis_0304
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Veis_0304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
nSTAND1
AAA_16
RsgA_GTPase
AAA_22
AAA_21
AAA_18
AAA_23
Viral_helicase1
AAA_25
NACHT
UvrA_DNA-bind
AAA_33
DnaJ_CXXCXGXG
DUF4350
Anti-TRAP
RNA12
Motif
Other DBs
NCBI-ProteinID:
ABM56095
UniProt:
A1WEN8
LinkDB
All DBs
Position
343477..349494
Genome browser
AA seq
2005 aa
AA seq
DB search
MTQGLIRIRGARQHNLKNLDLDIRTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLERMDRPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAGQL
FDRQTAQWVRHDSPETIYAALRRRCGFGAEPGEPTEPGVPDERPGQPPADPRIALTFPVQ
LPADTSAEQLAQWLSASGFTQVQAERVLAPQAGAAPVKVLDVVADRLRLGQAGKARVIEA
IEVALKRGNGRLDVYRLDDEGTGTGTGTGTGTGTGTGTGVGVGTGVGVGTGAPEPWRFSD
GLHCPDSDLRYRDPIASMFSFNSAVGACDSCRGFGRVIGVDYALVIPNDRLTLRAGAIKP
LQTPAWQEAQDDLMRHAETAGIPRDTPWYRLTGEQQKWVIGGAPGYKAGQWSTQWYGVGR
FFEYLESKAYKMHIRVLLSKYRSYTPCPACAGARLKTESLQWRIGSRQDADAVIEPARRF
MPQGLSWSRAQLESLPGLCLHDLMLLPIDRLRRFFAGMQLPQGDAAKGGDAQALRLLHQE
ITTRLQYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPR
DMHRITEAMLRLRDAGNTLVVVEHDPAVMLAADRIIDMGPGPGRLGGQIVFDGSTADLRT
ADTLTGAYLGGHKQVGLHFKRLVTDATPRLILEGARAHNLHNLSVEFPLQRLVTITGVSG
SGKSSLIQNVLAPALLRHFGRATDSPMAHTRLLGAEQLADVVFVDQAPIGKTARSNPVSY
VGAWDSIRALYALTPLACQRSYSASKFSFNHGDGRCPACGGSGFEHVEMQFLSDVYLRCP
DCDGQRYRPEILEIRLERGGRALSVADVLALTVAEAAALFATDPGVLRALQPLVDVGLAY
LALGQPVPTLSGGEAQRLKLAGYLAEAARTGASSRQALARKGSLFLFDEPTTGLHFDDIA
KLMRALRKLIDAGHSLIIIEHNLDVIRASDWLIDLGPEGGDAGGLIVAEGRPEDLRQHPR
SHTGQALRDYEQALGEGGHSVHEKAAALRKTERTAREKHAPAAQNVIRIVNAKEHNLKNL
SVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVY
GIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGTQHCVHDGAAVQPQTPESIAA
QLLTRFRGQHIGLLSPLVTNRKGVYTELADWARPRGYSHLRVDGQFLPTTGFPRLDRFKE
HSIELPVASLDIAPANEALLRQALAEALTHGKGVVHVLSHIDALRAALTAGSPTTGIGQV
QVFSTRRACPVCARSYAELDPRLFSYNSKHGWCPDCVGTGLRLTQDQRLRLDGSLAQDKE
KGREQSFAEPELADLADGAGSACPSCQGTRLNPGARAVKFAGLGITDIAAHTVTDLRRWI
EALRTGGGMSQRETGIARDLLPEIGSRLEFLEEVGLGYLTLDRAAPTLSGGEAQRIRLAA
QLGSNLQGVCYVLDEPTIGLHARDNQILLDALHKLGDKGNTLVVVEHDEGTIRRADHIID
IGPSAGKRGGRLVAQGSVGDITAAADSQTGRYLLHAITHPLQTRRSVAPEAPAETQANAQ
AGTQTKAPAGAQAKAQANAQAGAQANAQAGSAVRWLTVHGAQLHNLQNLSVAVPLRRLVA
VTGVSGSGKSTLARDVLLTNVQAWVQQRASRAGRDAMDAGKAPPLVGCTGLSGFESIDRV
LEVDQTPIGKTPRSCPATYIGFWDSIRKLYAQTLEAKARGYAAGRFSFNTGAGRCPGCEG
AGVRTIEMSFLPDVKVRCETCHGARFNPETLAVGWRGKSIGEVLQMEVDEAVDFFASMPG
IAHPLQLLQDMGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDIARRGQKAPHTLYVL
DEPTVGLHMADVDKLIRVLHRLVDAGHSVVVIEHDLDMIAEADWIIDLGPEGGQQGGRIV
AATVPQELVRQRSHTGRALAAVLAR
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atgacccagggactgatccgtatccgcggcgcacgccagcacaacctcaagaatctggat
ctggacatccgcaccggggaactgacggtggtcaccggccccagcggctcgggcaagtcc
agcctggtgttcgacacgctgtacgccgaggggcagcggcgctatgtggagaccttcagc
gcctacgcgcgccagtttctcgagcgcatggaccggcccgccgtggacaaggtagagggc
gtgcccccggcgattgcgatcgaccagaccaacccggtgcgatcgagccgctcgacggtg
ggcacgatgaccgagttgaacgaccacctgaagctgctgttcgcccgcgccggccagttg
tttgaccggcagaccgcgcaatgggtgcgccacgattcgcccgagaccatttatgccgcg
ctgcgcaggcgctgcggcttcggcgccgaaccgggcgagccgaccgaaccgggcgtgccg
gacgaacggcccggacagcccccggccgacccgcgcatcgcgctgacctttccggtgcaa
ctgcccgccgacacctcggccgagcaactcgcgcaatggctgtcggccagcggcttcacc
caggtgcaggccgagcgtgtgctggcgccgcaggcgggtgccgcgccggtcaaggtgctc
gacgtggtggccgaccgcttgcgcttggggcaggccggcaaggcgcgcgtgatcgaggcc
atcgaggtggctttgaagcgcggcaatggccggctcgatgtctaccgcctggacgacgag
ggcactggcactggcactggcactggcactggcactggcactggcactggcactggcgtt
ggcgttggcactggcgttggcgttggcactggcgcgcccgagccatggcggttttccgac
ggtctgcactgccccgacagcgacctgcgctaccgcgacccgatcgcgtcgatgttctcg
ttcaactctgccgtcggcgcctgcgacagttgccggggttttggccgcgtgatcggggtc
gattacgccttggtcatcccgaacgaccggctgacgctgcgcgccggcgccatcaagccg
ttgcagaccccggcctggcaagaggcgcaggacgacctgatgcgccatgccgagacggca
ggcattccgcgcgacacgccctggtaccggctgaccggggagcagcaaaaatgggtcatc
ggcggcgcgcccggctacaaggcggggcagtggagcacgcagtggtacggcgtcgggcgc
tttttcgagtacctggagagcaaggcgtacaagatgcatatccgcgtgctcctgtccaag
taccgcagctacacgccctgcccggcctgcgccggcgcgcgcctgaaaaccgagagcctg
caatggcgcatcggcagccggcaggacgccgacgccgtgatcgagccagcgcgccgcttc
atgccccagggcctgtcatggagccgcgcgcagttggaatccctgcccggcctgtgcctg
cacgacctgatgctgctgccgatcgaccggctgcgccggttttttgccggcatgcagttg
ccgcaaggggacgcggccaagggcggcgacgcccaggcgctgcggctgctgcaccaggag
atcacgacgcgcctgcaatacctgtgcgatgtcggcatcggctacctcacgctggatcgg
caaagccgcacgctgagcggcggcgaggtgcagcgcatcaacctgaccacggcgctgggc
accagcctggtcaacacgctgttcgtgctcgacgagcccagcatcggcctgcacccgcgc
gacatgcaccgcatcaccgaggccatgctgcgcctgcgcgacgccggcaacaccctggtg
gtggtcgagcatgacccggccgtgatgctggcggccgaccgcatcatcgacatgggcccc
ggccccggccgcctgggcgggcagatcgtgttcgacggcagcacggccgatttgcgcacc
gccgacaccttgaccggcgcctacctgggcgggcacaagcaggtcggcctgcacttcaaa
cgcctggtgaccgatgccacgccgcgcctcatcctggaaggcgcgcgcgcgcacaacctg
cacaacctgtcggtggagtttccgctgcaacgcctggtgaccatcaccggcgtcagcggc
tcgggcaagtccagcctgatccagaacgtgctggccccggcgctgctgcgccactttggc
cgggccaccgacagcccgatggcgcatacccgcctgctgggcgccgagcaactggcggat
gtggtgttcgtcgaccaggcgccgatcggcaagaccgcgcgctccaaccccgtgagctat
gtcggcgcctgggacagcatccgcgcgctgtatgcgctgaccccgctggcctgccagcgc
agctacagcgccagcaaattcagcttcaaccatggcgacgggcgctgcccggcctgcggc
ggctcgggcttcgagcatgtggagatgcaatttctcagcgatgtctacctgcgctgcccg
gactgcgatggccagcgctaccggcccgagatcctggagatacgcctggaacgcggcggc
cgggcgctgagcgtggccgatgtgctggcgctgacggtggccgaggccgcagcgctgttt
gccaccgaccccggggtgctgcgcgcgctgcaacccctggtcgatgtgggcctggcctac
ctggccctgggccagcccgtgcccacgctctcgggcggcgaggcgcagcgcctgaaactg
gccggttacctggccgaggccgcccgcacgggggcctcgtcgcgccaggcgctggcacgc
aaaggcagcttgttcctgttcgacgagcctaccaccggactgcacttcgacgacatcgcc
aagctcatgcgcgcgctgcgcaagctcatcgatgccgggcactcgctgatcatcatcgag
cacaacctggacgtgatccgcgccagcgactggctcatagacctgggccccgagggcggc
gatgccggcggcctgatcgtcgccgaaggccggcccgaagacctgcgccagcacccccgc
tcgcacaccggccaggcactgcgcgactacgagcaggcgctgggcgaaggcggccactcg
gtgcacgaaaaagcggcagcgctacgaaaaacagagcgcactgcgcgagaaaaacacgcg
ccagcggcgcaaaacgtcattcgaatcgtgaacgccaaagagcacaacctgaagaacctg
agcgtggacatcccgcgcggcaagttcagcgtggtcaccggcgtcagcggctcgggcaaa
tcgacgctggccttcgacatcctgttcaacgaaggccagcgccgctacctggaaagcctg
aacgcctacgcgcgcagcatcgtgcagccggcagggcggcccgaggtcgatgccgtctac
ggcatcccgcccaccgtggccatcgagcagcgcctgtcgcgcggcggccgcaaaagcacg
gtcggcacgaccaccgaggtctggcattttctgcgcctgctgtacgtcaagctcggcacc
cagcactgcgtgcacgacggcgccgcagtgcaaccgcaaacccccgagagcatcgcggcc
caactgctgacccggtttcgcggccagcatatcggactgctcagcccgctggtgacgaac
cgcaagggcgtgtacaccgagttggccgactgggcccgcccgcgcggctacagccatttg
cgcgtcgatggccaattcctgcccaccacgggctttccgcgcctggaccgcttcaaggag
cacagcatcgagctgcccgtggccagcctggacatagcgcccgccaacgaggccctgctg
cgccaggcgctggccgaagccctcacgcatggcaaaggcgtggtgcatgtgctcagccac
atcgatgccctgcgcgcggcgctgaccgcaggcagccccacgaccggcataggccaggtg
caggtgttttccacccggcgcgcctgcccggtctgcgcccgttcctatgccgaactcgac
ccgcgcctgttctcgtacaacagcaagcatggctggtgccccgactgcgtgggcacgggc
ctgcgactgacccaggaccagcgcctgcggctcgacggctcgctggcgcaggacaaggaa
aaaggccgcgagcagagctttgccgaacccgaactggcagacctggccgacggcgccggc
agcgcctgcccctcctgccagggcacgcgcctgaaccccggcgcccgcgcggtgaaattc
gccggcctgggcatcaccgacatcgccgcgcacacggtgaccgatctgcgccgctggatc
gaggcgctgcgcaccgggggcggcatgagccagcgcgagaccggcatcgcccgcgacctg
ttgcccgaaatcggcagccgcctggaattcctcgaagaagtgggcctgggctacctcaca
ctcgaccgggccgcgcccacgctcagcggcggcgaggcgcagcgcatccgcctggccgcg
caactgggcagcaacctgcaaggcgtgtgctatgtgctcgacgagccgaccatcggcctg
catgcgcgcgacaaccagatcctgctcgacgcgctgcacaaactgggcgacaagggcaac
acgctggtggtggtcgagcatgacgaaggcaccatccgccgcgccgaccacatcatcgac
atcggcccgagcgccggcaaacgcggcgggcggctggtggcgcaaggcagcgtgggcgac
atcaccgctgcggccgattcgcaaaccggccgctacctgctgcacgcgatcacgcacccg
ctgcaaacgcgccgcagcgtggcccccgaggcgccagccgagacacaggccaacgcgcag
gccgggacacaaaccaaggcgccagccggggcacaggccaaagcgcaggccaacgcgcaa
gccggggcacaggccaacgcacaggccgggagcgccgtgcgctggctcacggtgcatggc
gcgcaactgcacaacctgcaaaacctcagcgtcgccgtgccgctgcgccgcctggtggcc
gtgacgggcgtgagcggctcgggcaaatccacgctggcgcgcgacgtgctgctgaccaat
gtgcaagcctgggtgcagcaacgcgccagccgggccgggcgcgacgcgatggacgcgggc
aaagcgccgccgctggtcggctgcaccgggctgtcgggcttcgagagcatagaccgcgtg
ctggaggtggaccagacaccgatcggcaaaaccccgcgctcctgccctgccacctacatc
ggcttttgggacagcatccgcaagctgtacgcccaaacgctggaggccaaggcgcgcggc
tacgcggccgggcgcttcagcttcaacaccggcgcaggccgctgccccggctgcgaaggc
gctggcgtgcgcaccatagaaatgagctttctgcccgacgtcaaagtgcgctgcgaaacc
tgccatggcgcgcgcttcaaccccgagacgctggccgtcggctggcgcggcaaaagcatt
ggcgaggtgctgcaaatggaagtcgacgaggccgtggacttctttgccagcatgcccggc
atcgcccacccgctgcaactattgcaggacatgggcctgggttatctgacgctcggccag
ccctcgcccacgctcagcgggggcgaggcgcagcgcatcaaactggtgaccgaactgagc
aaggtgcgcgacgacatcgcccgccgggggcaaaaagcgccgcacaccctttacgtgctg
gacgaacccacggtgggcctgcacatggccgatgtcgacaagctgatccgcgtgctgcac
cgcctggtcgatgccggccacagcgtggtggtcatagagcatgacctggacatgatcgcc
gaggccgactggatcatcgacctcggccccgagggcggccagcaaggcgggcgcatcgtc
gccgccacggtgccgcaggaactggtgcgccagcgcagccatacgggccgggcgctggcg
gcggtgctggcccgctga
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