Vibrio sp. EJY3: VEJY3_13695
Help
Entry
VEJY3_13695 CDS
T01683
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vej
Vibrio sp. EJY3
Pathway
vej02020
Two-component system
vej02040
Flagellar assembly
vej05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vej00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VEJY3_13695
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VEJY3_13695
09142 Cell motility
02040 Flagellar assembly
VEJY3_13695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vej03021
]
VEJY3_13695
Transcription machinery [BR:
vej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VEJY3_13695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
IPPT
Motif
Other DBs
NCBI-ProteinID:
AEX23213
LinkDB
All DBs
Position
1:3054817..3056289
Genome browser
AA seq
490 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEDGQDEPLANG
EDKSELDASENSTSANEPTEIDVPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLAL
DDDMPVYQGETTESLYDYLMWQLDLTPFSETDRTIAMAIIDAVDEYGYLTLSPEEIHESF
DNEDIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEGTPWLEEARMILTDHID
HLGNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDNGKW
MVSINPDSIPKLKVNQQYAQLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCI
VEHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHV
STDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGI
APSSQRKRLL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaattaaagctaggtcagcagttagccatgacacctcagctgcaa
caagcgatccgtttattgcagttgtcgaccctcgaccttcaacaagaaattcaggaagca
ttggattcaaacccattattggaagttgaagatggccaagatgagcctctagctaacggt
gaagataaatcagagctggatgcatctgaaaatagcaccagcgctaacgaacctacagaa
attgacgttcctgacagttccgatgtaattgagaaatctgaaatcagttcagaacttgaa
atcgacaccacttgggatgatgtttacagtgcaaacactggcagtacagggctcgctctg
gatgacgatatgccggtgtatcaaggtgaaacgactgagtcactgtacgactacctgatg
tggcagttggatttaaccccgtttagtgaaaccgaccgcaccatcgcaatggcgatcatt
gatgccgttgacgaatacggctacttaaccctctctccagaagagattcatgaaagcttc
gataacgaagatattgaacttgatgaagtagaagcggtacgtaaacgcattcaacagttc
gatcctcttggcgtggcatcgcgaaatctacaagagtgtctgctacttcaattagcgacc
ttccctgaaggtacgccgtggcttgaagaagccagaatgattctgaccgatcacatcgat
catcttggtaatcgtgattacaaactggttatcaaagaaaccaaactaaaagaagcggat
ctgcgcgaagttctcaagctcattcagcaactggaccctcgcccgggaagccgcatcact
ccagatgacaccgaatacgttattcctgacgtgtccgtatttaaagataatgggaaatgg
atggtctccattaacccagatagcattccaaaactaaaagtaaatcaacagtacgcccag
ctcggaaaaggcaatagtgcagatagccagtacattcgtagcaatttgcaagaggcaaag
tggttaattaagagcttagagagtagaaacgagacgctactcaaagttgcaagatgtatt
gttgaacatcagcaagatttcttcgagtatggtgaagaagccatgaagccgatggtatta
aatgatgtagccttggcggtcgatatgcatgagtccacgatttctcgtgttacaacacaa
aaattcatgcatacgccacgtggtatttttgaattgaagtacttcttctccagccatgtt
agtacagataatggtggagaatgttcgtcaacggcaattcgtgcactcattaagaaactg
gtcgcggcagagaatactgcaaaaccacttagtgacagtaagattgccgctcttctggct
gaccaagggattcaggtcgcgagacgtacgatagcaaaatatcgagaatccttgggtatc
gccccttcaagtcagcgtaaacgcctactttag
DBGET
integrated database retrieval system
